PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678423084
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 554aa    MW: 61823.8 Da    PI: 7.1774
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678423084genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-11280336155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  678423084 280 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAAAAYDLAALKYWG 336
                57*******************4444.2344336655.779999**************98 PP
2AP2414.9e-13379435155
        AP2   1 sgykGV.....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV     r ++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  678423084 379 SVYRGVtrflsRLHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 435
                6899999999999**********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-8280336IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15280346IPR016177DNA-binding domain
PROSITE profilePS5103217.095281344IPR001471AP2/ERF domain
SMARTSM003803.8E-22281350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-12281345IPR001471AP2/ERF domain
PRINTSPR003672.6E-6282293IPR001471AP2/ERF domain
PfamPF008473.3E-7379435IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-15380445IPR016177DNA-binding domain
PROSITE profilePS5103218.202380443IPR001471AP2/ERF domain
SMARTSM003802.6E-27380449IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-16380444IPR001471AP2/ERF domain
PRINTSPR003672.6E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MYENRILPRT QDSRFEIPEC VERKRPVQSP TTRPLRRRIV DKRTRGHESP VNICAGRWYH  60
HLDCGVKKKI QRMTPDDNDY LSFSLPCDEI LNAAAVTVSS SSQPPMMHSS SPASHHFYTC  120
ADDFYAAGWS DPKPHGVHSE TGDDVELKDD GGGSSSSFVG YIQSPPKLED FLTGGESVET  180
QDFSLTYDPA HHPPAFIATF GDDVAFATPT QSPVESGNDL VQYPRCHVPA ETASNNLTLA  240
VNNSNKVNTP GTENNDGTAI IAVDSDNFKK IADTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQAR KGRQGGYDKE EKAAAAYDLA ALKYWGPTAT TNFPISNYSS ELEEMRHVTR  360
QEFIASLRRK SSGFSRGASV YRGVTRFLSR LHHQQGRWQA RIGRVAGNKD LYLGTFATEE  420
EAAEAYDIAA IKFRGGNAVT NFEMSRYDVE AIAKSRLPIG ETGKRLRVSL ESDMEVPFQR  480
ACRRARCSIS FSAEPTSAIP VIGAAPFLHQ NLIHHLHTGN SCVEDPTMVT PVSKMPPSPE  540
FYIWPQYSQE FPSN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678423084
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-114AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9GKN61e-166A0A2G9GKN6_9LAMI; Uncharacterized protein
STRINGVIT_00s1291g00010.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-100AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]