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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678420865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Dof | ||||||||
Protein Properties | Length: 170aa MW: 18789.7 Da PI: 7.746 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.1 | 8.2e-38 | 17 | 74 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a +cprC s ntkfCy+nnyslsqPryfCk+CrryWtkGGalrnvPvGgg+rk++++ 678420865 17 SAPTCPRCASPNTKFCYFNNYSLSQPRYFCKSCRRYWTKGGALRNVPVGGGCRKSRRT 74 5678***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 14 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.593 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.6E-32 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 21 | 57 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MASFTGGANR RPIGAESAPT CPRCASPNTK FCYFNNYSLS QPRYFCKSCR RYWTKGGALR 60 NVPVGGGCRK SRRTAKKDVP SAVDQGVFTV TPVNIPVSSW AIDGGKADTW DVKIDGQDEG 120 ESSKQSKGVD FADFGYQEST AQVRDYELVW HDDDVDQPLF SNNWSFDFSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678420865 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266430.1 | 1e-34 | PREDICTED: dof zinc finger protein DOF3.2-like | ||||
TrEMBL | A0A314L0R9 | 2e-33 | A0A314L0R9_NICAT; Dof zinc finger protein dof3.5 | ||||
STRING | XP_009782595.1 | 2e-33 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-34 | Dof family protein |