PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678420571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 808aa MW: 88338.5 Da PI: 7.251 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.2 | 1.7e-19 | 302 | 402 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F+ +++ +++lv++ 678420571 302 FEKILSASDAGRIGRLVLPKACAEAYfpTINQSEGIPIKIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFS-QRDPGGQLVIGC 399 99**************************777788999***************9989999999***9.********************.445999999988 PP E-S CS B3 97 frk 99 +++ 678420571 400 RKA 402 765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-19 | 299 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-28 | 299 | 411 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.54E-23 | 300 | 401 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 302 | 403 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-16 | 302 | 401 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-20 | 302 | 402 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 11.89 | 521 | 571 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.6E-10 | 528 | 567 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 808 aa Download sequence Send to blast |
MGSTKNCMNE VCRAATSTEW KKGWSLNSGG VATLCTSCGS AYENLVFCET FHMEDSGWRE 60 CRVCGKLVHC GCIASRYLYE YMDLGGIGCS SCTKLLEIQS AQALQIPCDV PNGNCIPRSE 120 VDSRPLVVES RIDPDKYNTE RLLKMALEHH RLKEPLLTNA ENSKRLPNVS EPCTPSVFVR 180 TDSSQQIQGP KSIYESLSHS PLSFSLSTPP SPVLPFREKG SEGSEQNKGS FKARHSFPKP 240 PKPTLLSGSE ASKGASSQAR VPRPPAEGRG RNQLLPRYWP RITDQELQQL SGDLKTTIVP 300 LFEKILSASD AGRIGRLVLP KACAEAYFPT INQSEGIPIK IQDVKGKEWT FQFRFWPNNN 360 SRMYVLEGVT PCIQNMQLQA GDTVIFSQRD PGGQLVIGCR KATNNMEAQD SQSPAIPTGD 420 ASSEQLVSSS IDDVPSNGAR AAEDTERHME RKKSKNMKNK RLLIHSDDAT ELRITWEEAQ 480 ELFRPASSAQ PTIVIVDGFE FEEFQEPPVF GKRTYFISKP SGEHEQLAQC DSCHKWRRLP 540 AHALLSANWT CSNNIWDLSR CSCSALESIN PKDLDYGSAG NDGKKQRTSE KKPASDAEPT 600 GLDALATAAV LGDNIIDIGE SSVGPTTRHP RHRPGCTCIV CIQPPSGKGK HEPSCKCNVC 660 LTVRRRFKTL MMRKKKRQSD REAAETAHDT DKRNTEKDGI AGRSLLNMNH EEATAGISSM 720 DSGEAGKGRL DLNSDPRHED DGIAAGVSLS TLINAANLPP SDMYLRGLPV PPSETGPPCL 780 LSAAAAANMG KPNISSASME DGNTQGES |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-67 | 280 | 409 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 663 | 674 | RRRFKTLMMRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678420571 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080654.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A2G9GBQ2 | 0.0 | A0A2G9GBQ2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00818.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |