PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678420347

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 479aa MW: 52482.1 Da PI: 8.3902

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678420347	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H 678420347 38 FICEVCNKGFQREQNLQLHRRGH 60 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-6	37	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.97E-8	37	60	No hit	No description
SMART	SM00355	0.0052	38	60	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.3E-5	38	60	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	38	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	80	110	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.4E-5	103	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.97E-8	110	135	No hit	No description
SMART	SM00355	170	115	135	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MNELEIHLRL LACYSCSLDP DAEVIALSPK TLMASNRFIC EVCNKGFQRE QNLQLHRRGH 60 NLPWKLKQKT PKDVVRKKVY LCPEPTCAHH DPTRALGDLT GIKKHYSRKH GEKKYKCEKC 120 AKKYAVISDW KAHSKTCGTR EYRCDCGTLF SRRDSFVTHR AFCDALAQET DRNILNQAPP 180 LGSHILTGFS RIAGAAQDQN NVSSLPFMNH ELGSRPAISQ FDSLTGLSAA AFSMPPLYLQ 240 QQLQSSEECQ FLNRTPLHNL MHQQQMTLEN GGCSSSVGLF NSLSFFPGSN NSSNAAVQDS 300 TIFTSGKLQH LMSMSIPSFY SGGAAMQSAG GPNTSATTLL QKASLYGCTD ATSSPFKPLP 360 PSFGVFEGNN QLQDLVNITG GGGSSSTFVP GPFGSNDQLA GFSGESKPTL DAISSSSNNN 420 NNGVFPSRGS DLEMEMEQGR LNLTRDFMGV GEIQRRSRMS MDHLTSGSPL NSFTWKPHQ

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MNELEIHLRL LACYSCSLDP DAEVIALSPK TLMASNRFIC EVCNKGFQRE QNLQLHRRGH  60
NLPWKLKQKT PKDVVRKKVY LCPEPTCAHH DPTRALGDLT GIKKHYSRKH GEKKYKCEKC  120
AKKYAVISDW KAHSKTCGTR EYRCDCGTLF SRRDSFVTHR AFCDALAQET DRNILNQAPP  180
LGSHILTGFS RIAGAAQDQN NVSSLPFMNH ELGSRPAISQ FDSLTGLSAA AFSMPPLYLQ  240
QQLQSSEECQ FLNRTPLHNL MHQQQMTLEN GGCSSSVGLF NSLSFFPGSN NSSNAAVQDS  300
TIFTSGKLQH LMSMSIPSFY SGGAAMQSAG GPNTSATTLL QKASLYGCTD ATSSPFKPLP  360
PSFGVFEGNN QLQDLVNITG GGGSSSTFVP GPFGSNDQLA GFSGESKPTL DAISSSSNNN  420
NNGVFPSRGS DLEMEMEQGR LNLTRDFMGV GEIQRRSRMS MDHLTSGSPL NSFTWKPHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-31	111	172	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-31	111	172	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	77	KLKQKTPKDVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678420347

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547771.1	1e-130	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-101	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A4D8YP47	1e-128	A0A4D8YP47_SALSN; Uncharacterized protein
TrEMBL	A0A4D9B9I0	1e-128	A0A4D9B9I0_SALSN; Uncharacterized protein
STRING	Migut.E00578.1.p	1e-119	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-88	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]