PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678416536

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 327aa MW: 36488.7 Da PI: 7.6528

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678416536	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.1	4.3e-37	109	186	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls+akey+r+hkvC hsk+++v+v+gle rfCqqCsrfh+l efD ekrsCrrrL++hn+rrrk+q+ 678416536 109 RCAVDGCDTDLSSAKEYYRKHKVCAEHSKCSTVMVDGLELRFCQQCSRFHSLCEFDREKRSCRRRLHHHNARRRKPQQ 186 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.8E-30	104	171	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.077	107	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-35	108	189	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-29	110	183	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEWNTGWDLD TVLSFGLGPK QHQQPPHNPK TVPFFAEDEE LLTLTPSTEA PTHNLHFTLF 60 CSQQPQQASP SSSLGLQLGN AGTTTLKPSS PTAASGQTKL SCKNHPPPRC AVDGCDTDLS 120 SAKEYYRKHK VCAEHSKCST VMVDGLELRF CQQCSRFHSL CEFDREKRSC RRRLHHHNAR 180 RRKPQQEIIQ KQHPASPFYR GGDPMGFFLN NDSASHFQQH GAHSSHLMQP DAAGGAAYIN 240 FNQIEAPTEQ GRALSLLSPD QWGIRVREQT VPPPSGYAYG AAAQNETVAY GMGEHGFARE 300 FMLPTQPHAP HRPTPPYELH FYPNGFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-24	110	183	11	84	squamosa promoter binding protein-like 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678416536

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770711.1	2e-45	squamosa promoter-binding-like protein 12
Refseq	XP_024994203.1	3e-45	squamosa promoter-binding-like protein 12
TrEMBL	A0A2J6KYJ7	4e-44	A0A2J6KYJ7_LACSA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	1e-31	squamosa promoter-like 11