PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678415996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 574aa MW: 62231.6 Da PI: 6.7908 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272 | 1.9e-83 | 216 | 574 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +++L+++A a+s+g+ +a ++ +rl e +p + l+ay++ A ++r + lp+ + +e + ++++++ vsP++k+++++aN a 678415996 216 RQALIDAAVAISEGKPDAAAEIFTRLLE------EPKHSLTAYMVSAFKSRGSF-------NLPS-----MAAEEYAVSTQMLYCVSPCFKLGFIAANLA 297 5788888888888888888888888865......56777888888888888665.......2233.....335677788899****************** PP GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 Il a+++ e++H++Df+++qG+Q++ Ll++La+ + g+ sl iT++ + +e+l+++ge L+ + ++gv++ f+v ++++++ e+L+++ 678415996 298 ILGAASERnpcfEKIHVLDFELGQGGQYVHLLHTLAAAETGSKSLTITAFTY-SGAAEEKLRTVGEVLKALSLKIGVSLIFHV-RDFNIAAISREKLEIN 395 ****999889999**************************************9.5559*************************9.677************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivn 296 ++EalaVn++++lh+l+desv++e+ rd++L+ vk+lsP vv+vveqe+++n++++ +r+ +a +yy+al++sl+++++++s +r+ + + +gr+i n 678415996 396 SDEALAVNFAFKLHKLPDESVTVENIRDDLLRRVKTLSPAVVTVVEQELNTNTAPLITRVRDAYDYYAALLESLDSTVAADSpPDRARILNG-IGRRILN 494 **********************************************************************************8899999998.******* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 va eg+er+er+e ++kWr r+++aGF+p +s +a+++ ++ l+ + + g++v e+sg +++gW++++L+++SaWr 678415996 495 SVASEGRERVERCEVFGKWRCRMSMAGFQPFVISPRATESLRAKLNSGArvNPGFTVSEDSGGICFGWRGKTLTVASAWR 574 ******************************************99988766789**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.284 | 189 | 552 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-81 | 216 | 574 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MSSGGPPDFY SAASGSAAAS VLLSSAAGVY NPLLAQEGHF SMVGRDAGAQ IRLPDFIGKR 60 SLVDVQQNQQ ALGFYLRSMK KMRPHYEVSP LAFSPITSIP RYGVPILRQQ GIRDSTLATA 120 SFSNSPVIPS AVNGDFFTRT EETEKSLMNH RLKELEKELL KDEEEDGSVS VVTNTELSEA 180 IRNLIDPAQN SISPSPTSSS SSSSSSSVSQ PSPCQRQALI DAAVAISEGK PDAAAEIFTR 240 LLEEPKHSLT AYMVSAFKSR GSFNLPSMAA EEYAVSTQML YCVSPCFKLG FIAANLAILG 300 AASERNPCFE KIHVLDFELG QGGQYVHLLH TLAAAETGSK SLTITAFTYS GAAEEKLRTV 360 GEVLKALSLK IGVSLIFHVR DFNIAAISRE KLEINSDEAL AVNFAFKLHK LPDESVTVEN 420 IRDDLLRRVK TLSPAVVTVV EQELNTNTAP LITRVRDAYD YYAALLESLD STVAADSPPD 480 RARILNGIGR RILNSVASEG RERVERCEVF GKWRCRMSMA GFQPFVISPR ATESLRAKLN 540 SGARVNPGFT VSEDSGGICF GWRGKTLTVA SAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-26 | 214 | 574 | 11 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678415996 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076123.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A2G9I9L6 | 0.0 | A0A2G9I9L6_9LAMI; Uncharacterized protein | ||||
TrEMBL | S8EMR1 | 0.0 | S8EMR1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.F01094.1.p | 1e-179 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-117 | SCARECROW-like 8 |