PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

FAR1

Protein Properties

Length: 779aa MW: 89089.3 Da PI: 7.078

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678414827	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.1	2.3e-31	73	163	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw v+++++eHnHel+ 678414827 73 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWIVSSFSKEHNHELV 163 9*************************************998888545677889********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-29	73	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.7E-31	285	377	IPR018289	MULE transposase domain
Pfam	PF04434	4.1E-10	561	599	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.09	565	601	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-8	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MENGVIEFDI GLGGGDESID IETSTEHGEV PDDTNSRGSG SAGNTSTYVP VGDIDLEPYE 60 GMEFESEEAA KAFYNSYARR VGFSTRVSSS RRSRKDGAII QRSFVCAKEG FRNLNEKRTK 120 DREIKRPRTV TRVGCKASLS VKIQDSGKWI VSSFSKEHNH ELVRPDEVHR LRSHRQISGP 180 AKTLIDTLQA AGMGPRRIMS VLVKEYGGIS KVGFTEVDCR NYMRNSKKRS MEGDIQLLLD 240 YLKQKHAENP SFLYSVQLDE EQCTGNVFWA DLRARADYNH FGDTVTFDTT YRSNRYRLPF 300 APFTGLNHHG HPVLFGCAFL INESEASFVW LFRTWLAAMS GRAPMSITTE HDAVIRSAVT 360 QVFPTARHRF CKWHIYKQCQ EKLSQVMLKH TQFEAAFHKC VNLSETTEEF ESCWYSLVDK 420 YDLRDHKWFQ AIFDDRRQWV PAYLRDNFFA EMSITQRSDS MNSYFDGYVN ASTSLSQFFR 480 LYEKALESRH EKEVKADFDT MNTPPVLRTP SPMEKQASEF YTRRIFTRFQ EELISTLTYV 540 ASKTEDDGEV TTYQVEKFGE NHKAYHVRFN VLEMKVACSC QMFEFSGLLC RHILAVFRVT 600 NVLTLPSHYI LKRWTRNAKS SVVLEEHVSG FNSYLESHMV RYNTLRHEAF KIADEGAESV 660 ESYTVAMAAF ADASRKVALA TMTEGKVPMA NGSSFSHDSA MDAIHSVHCH KGQGSSAGQL 720 SEANMDEKIT ELSKDLEHAN HKCEVYRMNL LSLLRDIEDH KQRLSVEVQN IKLSLRDGL

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MENGVIEFDI GLGGGDESID IETSTEHGEV PDDTNSRGSG SAGNTSTYVP VGDIDLEPYE  60
GMEFESEEAA KAFYNSYARR VGFSTRVSSS RRSRKDGAII QRSFVCAKEG FRNLNEKRTK  120
DREIKRPRTV TRVGCKASLS VKIQDSGKWI VSSFSKEHNH ELVRPDEVHR LRSHRQISGP  180
AKTLIDTLQA AGMGPRRIMS VLVKEYGGIS KVGFTEVDCR NYMRNSKKRS MEGDIQLLLD  240
YLKQKHAENP SFLYSVQLDE EQCTGNVFWA DLRARADYNH FGDTVTFDTT YRSNRYRLPF  300
APFTGLNHHG HPVLFGCAFL INESEASFVW LFRTWLAAMS GRAPMSITTE HDAVIRSAVT  360
QVFPTARHRF CKWHIYKQCQ EKLSQVMLKH TQFEAAFHKC VNLSETTEEF ESCWYSLVDK  420
YDLRDHKWFQ AIFDDRRQWV PAYLRDNFFA EMSITQRSDS MNSYFDGYVN ASTSLSQFFR  480
LYEKALESRH EKEVKADFDT MNTPPVLRTP SPMEKQASEF YTRRIFTRFQ EELISTLTYV  540
ASKTEDDGEV TTYQVEKFGE NHKAYHVRFN VLEMKVACSC QMFEFSGLLC RHILAVFRVT  600
NVLTLPSHYI LKRWTRNAKS SVVLEEHVSG FNSYLESHMV RYNTLRHEAF KIADEGAESV  660
ESYTVAMAAF ADASRKVALA TMTEGKVPMA NGSSFSHDSA MDAIHSVHCH KGQGSSAGQL  720
SEANMDEKIT ELSKDLEHAN HKCEVYRMNL LSLLRDIEDH KQRLSVEVQN IKLSLRDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678414827

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552571.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552572.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552573.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G9G6P2	0.0	A0A2G9G6P2_9LAMI; Uncharacterized protein
STRING	EOX98949	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]