PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678414251

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 460aa MW: 50929 Da PI: 5.7207

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678414251	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg+ +s+ ++ Hi ++ 678414251 109 FECPGCGRGYSSEEEVSAHIDSC 131 89*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	2.94E-21	162	255	No hit	No description
SuperFamily	SSF143503	1.05E-17	171	254	IPR018997	PUB domain
SMART	SM00580	4.5E-13	175	238	IPR018997	PUB domain
Pfam	PF09409	2.0E-17	175	246	IPR018997	PUB domain
SuperFamily	SSF54236	1.89E-13	319	432	IPR029071	Ubiquitin-related domain
SMART	SM00166	0.0052	345	434	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	1.2E-8	347	432	No hit	No description
PROSITE profile	PS50033	11.544	348	432	IPR001012	UBX domain
Pfam	PF00789	1.0E-5	349	399	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDEMRDKMKG LMKKVNFSSS SSGKFKGQGR VLGSSSSSSP SPSPSPSLRN SNPPPPPRKI 60 ITPREPESDP KKVEIPVLPN PSSETGFDPF NSLITSGKRN PNGYSLKVFE CPGCGRGYSS 120 EEEVSAHIDS CAESSKSVIE GESTAAEEGQ SESNVNGDQL QECISTYVSG KPSDAAIEVV 180 IKLLRNVVKE PGNSKFRRIR LVNPKIKEAI ADIPGGVELL EYVGFVLKDE DGDMFLIMEE 240 EPTELVINLA VNAVSLLEKK NQPPAEPRTL EKREKPEPVQ PKQFDRQIRV FFSVPESVAA 300 RIEVPDSFYN LTAEEVKREA EMRRRKIEES KLLIPKSYRE KQAQASKRRY KRTLIRVQFP 360 DGVVLQAIFS PSEATIALYE FVSSALKDPS LQFELLHPVV VKRRVIPHST GAGEKRVTLE 420 DEDLVPSALL KFKPIETDDV VFTGLSNELL LISEPLQPGP

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDEMRDKMKG LMKKVNFSSS SSGKFKGQGR VLGSSSSSSP SPSPSPSLRN SNPPPPPRKI  60
ITPREPESDP KKVEIPVLPN PSSETGFDPF NSLITSGKRN PNGYSLKVFE CPGCGRGYSS  120
EEEVSAHIDS CAESSKSVIE GESTAAEEGQ SESNVNGDQL QECISTYVSG KPSDAAIEVV  180
IKLLRNVVKE PGNSKFRRIR LVNPKIKEAI ADIPGGVELL EYVGFVLKDE DGDMFLIMEE  240
EPTELVINLA VNAVSLLEKK NQPPAEPRTL EKREKPEPVQ PKQFDRQIRV FFSVPESVAA  300
RIEVPDSFYN LTAEEVKREA EMRRRKIEES KLLIPKSYRE KQAQASKRRY KRTLIRVQFP  360
DGVVLQAIFS PSEATIALYE FVSSALKDPS LQFELLHPVV VKRRVIPHST GAGEKRVTLE  420
DEDLVPSALL KFKPIETDDV VFTGLSNELL LISEPLQPGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	7e-15	303	432	23	146	Tether containing UBX domain for GLUT4
5ifs_C	7e-15	303	432	23	146	Tether containing UBX domain for GLUT4
5ifw_A	4e-15	303	432	23	146	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678414251

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070586.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-163	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A4D8YQY7	0.0	A0A4D8YQY7_SALSN; UBX domain-containing protein 6
STRING	XP_009793042.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10112	6	6

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]