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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678413690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 170aa MW: 19131.2 Da PI: 8.417 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 70.8 | 2.6e-22 | 36 | 84 | 2 | 50 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 Cqv++C+++l++ak yhrrhkvCe+h+ka++vl++g +qrfCqqCsrf 678413690 36 CQVDACATNLAHAKPYHRRHKVCEFHAKAAAVLLQGSQQRFCQQCSRFV 84 ************************************************5 PP | |||||||
2 | SBP | 53.6 | 5.8e-17 | 134 | 166 | 45 | 77 |
TTSSEEETTT--SS--S-STTTT-------S-- CS SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C rfhelsefD++krsCrrrLa+hnerrrk++ 678413690 134 NCRRFHELSEFDDSKRSCRRRLAGHNERRRKST 166 7******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-27 | 28 | 79 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.931 | 33 | 165 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.49E-20 | 35 | 85 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-17 | 36 | 83 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.76E-14 | 134 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.3E-10 | 134 | 164 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-27 | 135 | 152 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGDGEEDEDT SWAASKQIEG GSSSSSSSSS SQRRPCQVDA CATNLAHAKP YHRRHKVCEF 60 HAKAAAVLLQ GSQQRFCQQC SRFVLCSCSQ PNLFAYTTTL YSNEVYLNFD PSIVTPTCTA 120 LRGVVYDKTL PTSNCRRFHE LSEFDDSKRS CRRRLAGHNE RRRKSTYDSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-19 | 26 | 83 | 1 | 58 | squamosa promoter binding protein-like 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678413690 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-25 | squamosa promoter binding protein-like 4 |