PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678411738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 316aa MW: 33731.7 Da PI: 8.3085 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 111.5 | 4.4e-35 | 55 | 111 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+Y+eClkNhAas+GghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++ 678411738 55 VVNYRECLKNHAASIGGHAVDGCGEFMPSPNSNpAEPTSLKCAACGCHRNFHRREPD 111 589*****************************99********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-23 | 56 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-29 | 56 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.5E-31 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.576 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.13E-14 | 196 | 262 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 197 | 262 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-23 | 201 | 258 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDLGGNSTVK TPEAETATPT GMLPAKPSPF TNGVLKRHQQ PAPVNQDNHS HQPVVVNYRE 60 CLKNHAASIG GHAVDGCGEF MPSPNSNPAE PTSLKCAACG CHRNFHRREP DDPRPNDVPA 120 LEYHPLHRHH PPPPQIQGGN SSGSPVNSPS PPPISSSYYP SATHTLLALS HGLSGAPPGN 180 SSLASAPCNP AAVAIFSSGS RKRFRTKFTQ YQKEKMLELA EKVGWKMQKK DEDVINESCS 240 GMGVDKGVFK VWMHNNKNAL GRKDSLHPPP ETTPLLPQPP PPPLPSSTAA AYTQDDIQLN 300 SYHSAPGTTN GSPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-19 | 200 | 259 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678411738 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085755.1 | 1e-101 | zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A2G9HG83 | 1e-104 | A0A2G9HG83_9LAMI; Uncharacterized protein | ||||
STRING | XP_009620291.1 | 5e-86 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 6e-64 | homeobox protein 34 |