PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678410082
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 466aa    MW: 50029.4 Da    PI: 8.0001
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678410082genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-125076127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++++G+C yG+rC+F+H++
  678410082 50 PGEPDCIYYLKSGICGYGSRCRFNHPR 76
               5789*********************96 PP
2zf-CCCH406.3e-1398122327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++lC+++++tGtCk+G++Ck++H++
  678410082  98 QPLCQYYMKTGTCKFGPTCKYHHPK 122
                79*********************96 PP
3zf-CCCH34.33.9e-11143168227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++ +tG+Ck+G +CkF+H++
  678410082 143 GEKECSYYVKTGHCKFGVTCKFHHPQ 168
                7899********************97 PP
4zf-CCCH37.34.6e-12312337227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++C++++rtG+Ck+G++Ck++H+p
  678410082 312 SRPECQYYLRTGECKFGPTCKYHHPP 337
                589*********************97 PP
5zf-CCCH32.61.3e-10359383327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C++++++G Ck+G++Ck+ H++
  678410082 359 ARICSHYSQNGVCKFGPSCKYDHPM 383
                589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2674977IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-54976IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-65478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-55577IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.97695123IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-695122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-698123IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1098122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493141169IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5143169IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502310338IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6310337IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4316337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774356384IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6356383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6358385IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8359383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5360381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MERYGESQAM EGAALDPVEE WVAPGGETGL EEPMWQLGLG DGPQSYPERP GEPDCIYYLK  60
SGICGYGSRC RFNHPRDRRM AVAAFRSGGV DYPERAGQPL CQYYMKTGTC KFGPTCKYHH  120
PKHGVDSTAP VTMNVCGYPL RPGEKECSYY VKTGHCKFGV TCKFHHPQPS SMQLPVQDAG  180
HGHLASPASK PTPALYSTLQ TPPVQSSQQY GLIQGNWPIA RPAILPGSYV PGGYGPMLFS  240
PGVVPVSGWT PYPAHLTSGS SPVSQPTFGV GPIYGITPLS PSAPAYPGPY MSIAGGASSS  300
NQKEPALPER PSRPECQYYL RTGECKFGPT CKYHHPPECI SSNTNVMLSP MGLPLRPGAR  360
ICSHYSQNGV CKFGPSCKYD HPMRALSYSS STSSLTDMPV APYPMVSINA ILTPPSSSDT  420
GPNKEHFSRS RMGSQLTIQH SLQDSIPSGP GNSSSTSQGG EAQTSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678410082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ6NPN31e-140C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2G9GS850.0A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-141C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]