PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678407520

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TALE

Protein Properties

Length: 520aa MW: 58261.4 Da PI: 7.7761

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678407520	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.9	9.8e-10	377	414	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps++++ L++++gL+++qV++WF N R + 678407520 377 FEHflHPYPSEADKHLLSRQTGLSKNQVSNWFINARVR 414 665559******************************88 PP
2	BELL	102.2	3.9e-33	237	307	1	71
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 er+e q++k kLls+l+eV++rY +y+eq+q +++ F+ v+g g+a+pYt+lA+ka+SrhFrc+kdaia 678407520 237 ERTEYQRRKIKLLSMLDEVEERYMRYCEQMQGLVNWFDSVVGRGAAAPYTALAQKAMSRHFRCMKDAIAAE 307 789*****************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.9E-52	168	306	IPR006563	POX domain
Pfam	PF07526	1.8E-45	174	305	IPR006563	POX domain
PROSITE profile	PS50071	12.374	355	418	IPR001356	Homeobox domain
SMART	SM00389	3.2E-9	358	422	IPR001356	Homeobox domain
CDD	cd00086	2.02E-11	358	419	No hit	No description
SuperFamily	SSF46689	3.12E-17	359	426	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-28	361	424	IPR009057	Homeodomain-like
Pfam	PF05920	5.3E-18	375	414	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MKDPGLDLEP QGLGGHPAAY EGMLPEFVWQ KEAGEGPSTA DESQIQQSFR WPQKHHTPVG 60 VNGVPEEHQH QHHHHHPQMK DSSSYLHHLI QNPADPQFQG GHHLIGPSNL AAGPSQFVWA 120 APADEASGLR TGRVLEGQGL SLSLSSTNKL QKMNMEQGDL YFRSQGIIGP SNFLRNSRYL 180 RPAQELLQEF CCVGRGQFKY LKLKTNSDDG NPNAATAAAT SLQTPSSKDR HSLSPSERTE 240 YQRRKIKLLS MLDEVEERYM RYCEQMQGLV NWFDSVVGRG AAAPYTALAQ KAMSRHFRCM 300 KDAIAAELKS ACQLLGEKDV AGSRGLTKGE TPRLKVLEQR YRQQKSLQQM AVLDPESWRP 360 QRGLPERSIN ILRSWLFEHF LHPYPSEADK HLLSRQTGLS KNQVSNWFIN ARVRLWKPMV 420 EEMYQQELQE VHQQGAAAGD AAAARHPSPN INAATTENDL SEEGAASADI SRCFTPERIP 480 DAVPASRNRP AGGVSLTLEL RHSENLPKMR HLSIRDFEAY

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MKDPGLDLEP QGLGGHPAAY EGMLPEFVWQ KEAGEGPSTA DESQIQQSFR WPQKHHTPVG  60
VNGVPEEHQH QHHHHHPQMK DSSSYLHHLI QNPADPQFQG GHHLIGPSNL AAGPSQFVWA  120
APADEASGLR TGRVLEGQGL SLSLSSTNKL QKMNMEQGDL YFRSQGIIGP SNFLRNSRYL  180
RPAQELLQEF CCVGRGQFKY LKLKTNSDDG NPNAATAAAT SLQTPSSKDR HSLSPSERTE  240
YQRRKIKLLS MLDEVEERYM RYCEQMQGLV NWFDSVVGRG AAAPYTALAQ KAMSRHFRCM  300
KDAIAAELKS ACQLLGEKDV AGSRGLTKGE TPRLKVLEQR YRQQKSLQQM AVLDPESWRP  360
QRGLPERSIN ILRSWLFEHF LHPYPSEADK HLLSRQTGLS KNQVSNWFIN ARVRLWKPMV  420
EEMYQQELQE VHQQGAAAGD AAAARHPSPN INAATTENDL SEEGAASADI SRCFTPERIP  480
DAVPASRNRP AGGVSLTLEL RHSENLPKMR HLSIRDFEAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	364	422	5	63	Homeobox protein Meis2
3k2a_B	4e-16	364	422	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678407520

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009614985.1	1e-157	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-121	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2G9G0C1	1e-178	A0A2G9G0C1_9LAMI; Transcription factor MEIS1
STRING	XP_009614985.1	1e-156	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-122	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]