PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678405644

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

BBR-BPC

Protein Properties

Length: 299aa MW: 33093.7 Da PI: 9.7451

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678405644	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	353.2	5.7e-108	13	299	19	301
GAGA_bind 19 slkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtksidslqqls 115 s+k ++m ++aerda+i+ernla+sekkaa+aerd a lqrd+a+aern+a++erdn+++al+++en+++ ++++g+++++g+ksi+++q + 678405644 13 SMK-----HIMGVMAERDAAIQERNLAISEKKAALAERDLAILQRDTAIAERNNAIMERDNAIAALQYRENNVSssiCQCSSGCRSSHGVKSIHHSQPQG 107 444.....8************************************************************99877778899999999999999999877 PP GAGA_bind 116 e.......pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDest 207 + +++++ + re++ +e++p++++++ + k++kk +q+a+ + k s+ ++ +++ +sk+++k+++l+ln+vs+De++ 678405644 108 HdlphvtiAVVAPEPSKaYREKRAKETKPVSTTPSGKASKSSKKLKQEAEGHNTMIPWKSDPDSDIAIDDL--NRHAGTSKQHWKDQELGLNQVSFDETK 205 76877666556666666577777777777777554444333333333333322222223333223333333..333357***************** PP GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +P+PvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS++af+klL++Laa+G+dlsnpvDLk hWAkHGtn+++ti+ 678405644 206 MPIPVCSCTGVLRACYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAADGHDLSNPVDLKPHWAKHGTNRYITIK 299 *******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.4E-129	1	299	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.2E-93	5	299	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MLLFQWLMQH QPSMKHIMGV MAERDAAIQE RNLAISEKKA ALAERDLAIL QRDTAIAERN 60 NAIMERDNAI AALQYRENNV SSSICQCSSG CRSSHGVKSI HHSQPQGHDL PHVTIAVVAP 120 EPSKAYREKR AKETKPVSTT PSGKASKSSK KLKQEAEGHN TMIPWKSDPD SDIAIDDLNR 180 HAGTSKQHWK DQELGLNQVS FDETKMPIPV CSCTGVLRAC YKWGNGGWQS SCCTTNLSMY 240 PLPAVPNKRH ARVGGRKMSG SAFSKLLSRL AADGHDLSNP VDLKPHWAKH GTNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678405644

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821117.1	1e-146	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_018821118.1	1e-146	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_018821119.1	1e-146	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_018821120.1	1e-146	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_018821121.1	1e-146	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_018821122.1	1e-146	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Swissprot	Q8L999	1e-120	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2I4ENY7	1e-145	A0A2I4ENY7_JUGRE; protein BASIC PENTACYSTEINE6-like isoform X1
STRING	GLYMA04G02860.1	1e-142	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5353	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-117	basic pentacysteine 6