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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678405348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 365aa MW: 40256.9 Da PI: 8.6839 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.9 | 6e-43 | 90 | 167 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gCe+dls+ak y++rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+q+ 678405348 90 RCQVQGCEVDLSSAKPYYSRHKVCGFHSKSPEVIVAGIEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKPQP 167 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-33 | 86 | 152 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.111 | 88 | 165 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-40 | 89 | 170 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-33 | 91 | 164 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MFFTRWSSDA PKEEDITMEK GSPSSSSSSS SPSSGAAADS LNGLRFGRKM YFQGMGSGLP 60 PKSSSPLETI SSSPAKRGRT KLLYCNQPPR CQVQGCEVDL SSAKPYYSRH KVCGFHSKSP 120 EVIVAGIEQR FCQQCSRFHQ LSEFDQGKRS CRRRLAGHNE RRRKPQPGSL FSSAFPNLSL 180 LDKHRKTGSF LMNSYTSLPV RDSWVNAATK QVYPDNIWHS SSSQIPLSEY LQVSTSQPLS 240 ISRVSSEECL TAASDSTGAP SLLSYQPWNL RIIPSSSHWF NDNLGPTSTH PESDAPILSQ 300 FSCQPWGFKG IQNSYRVGLT SPELGLGQAS HNVNCDYNEV LPLTQHSEGQ LSEAASSVHH 360 TQWPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 91 | 164 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678405348 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549507.1 | 8e-95 | squamosa promoter-binding-like protein 17 isoform X2 | ||||
TrEMBL | A0A2G9H6R7 | 4e-96 | A0A2G9H6R7_9LAMI; Uncharacterized protein | ||||
STRING | XP_010102560.1 | 7e-79 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 8e-46 | squamosa promoter binding protein-like 9 |