PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678405248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 155aa MW: 17903.4 Da PI: 9.9569 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H 678405248 60 FECQYCSRNFPTSQALGGHQNAH 82 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 57 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.21E-6 | 58 | 88 | No hit | No description |
Pfam | PF13912 | 1.3E-7 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.739 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDRTEAETRD FITSFSQLPF LRPPKKNIKL FGKEFRCAAD MYIQEEDQER GNKDKVYRKF 60 ECQYCSRNFP TSQALGGHQN AHKRERQHAK RMMMHLDSEP YAASVPVAYA YHSPWIRSRQ 120 QMSTISGSKP KVVAIATAHC KTTGSKERLS LDLSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA) (PubMed:16679458, PubMed:17507408). Mediates the induction of GL1 expression by GA in inflorescence organs and is antagonized in its action by the DELLA repressor GAI. Acts upstream of the trichome initiation regulators GL1 and GL3, and downstream of the GA signaling repressor SPINDLY (SPY) (PubMed:16679458). Does not play a significant role in the cytokinin response (PubMed:17507408). Controls trichome branching through GA signaling (PubMed:22210898, PubMed:23825141). Acts downstream of the key regulator STICHEL (STI) in an endoreduplication-independent pathway (PubMed:22210898). Controls trichome cell division indirectly by acting downstream of a key endoreduplication regulator SIAMESE (SIM) (PubMed:23825141). {ECO:0000269|PubMed:16679458, ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:22210898, ECO:0000269|PubMed:23825141}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678405248 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. {ECO:0000269|PubMed:16679458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257153.1 | 6e-30 | PREDICTED: zinc finger protein GIS-like | ||||
Refseq | XP_019243100.1 | 7e-30 | PREDICTED: zinc finger protein 8-like | ||||
Swissprot | Q84WI0 | 5e-23 | GIS_ARATH; Zinc finger protein GIS | ||||
TrEMBL | A0A164X6M9 | 1e-28 | A0A164X6M9_DAUCS; Uncharacterized protein | ||||
TrEMBL | A0A1J6J3C3 | 2e-28 | A0A1J6J3C3_NICAT; Zinc finger protein 8 | ||||
STRING | POPTR_0006s20970.1 | 1e-30 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1473 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41940.1 | 9e-24 | zinc finger protein 8 |