PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678403420
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 328aa    MW: 37707 Da    PI: 7.4909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678403420genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.7e-141153345
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               i+ ++ r+ tf kR++g++KK  E  +LCd+ +++ii+ ++++
  678403420 11 ISKERSRTATFKKRKAGLIKKMVEFTTLCDVSACMIIYCPKQE 53
               889999********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.89E-16153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.442148IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-11160IPR002100Transcription factor, MADS-box
CDDcd002661.78E-18276No hitNo description
PRINTSPR004042.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003198.8E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRAKLSMEL ISKERSRTAT FKKRKAGLIK KMVEFTTLCD VSACMIIYCP KQETGAAVVE  60
PEIWPENPEE VRRIVEIYKS KTRESGNKTF GLTDFFKDRK KKVEDDLAKL RKKNLEAKYP  120
TKIDFINAVP ESKLRAFAAE LMERLDYVKS RIEFLRSQEQ TALMDMSFVP FYNPAAAMQG  180
FEVINPLTPA VKPYEGYPQY PYSDHHQHHH QEMQQNSLMM LLTNENFREG SNTGNIQCAS  240
IQQFIYESSN CGVAGDTIGH NPRQLGRHYP PVISPPVQPQ YVPMIQPVQP PPYAQCTAMV  300
PFSTEDNGED AQDYIPQYQM NNYRAYYD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678403420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.19e-99agamous-like MADS-box protein AGL14
TrEMBLS8DGW32e-83S8DGW3_9LAMI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-22M-type_MADS family protein