PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678402943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 286aa MW: 31534.5 Da PI: 7.5774 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.1 | 1.8e-32 | 38 | 95 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 ++Y eClkNhAaslGgha+DGCgEf+ps++++ +++++lkCa CgCHRnFHRr++e++ 678402943 38 ITYGECLKNHAASLGGHALDGCGEFLPSPEANpSDPTSLKCAVCGCHRNFHRRDPEQH 95 79******************************9********************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 38 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.5E-27 | 38 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-28 | 39 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.838 | 40 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.53E-17 | 158 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-28 | 165 | 231 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.7E-25 | 170 | 226 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
METTDSTVKS PGVEPQGFTN GLLKLHGQLG LHHHPVVITY GECLKNHAAS LGGHALDGCG 60 EFLPSPEANP SDPTSLKCAV CGCHRNFHRR DPEQHHHLPP PGAVLALEYR PHHRHLPPTP 120 ETMAGSPNDS PSPPPISSSY YPPLTALSHP ISDPTGTNSV SAALLPSSSR KRFRTKFTQD 180 QKKKMLELAE KLEWKMQKRD EEVINNFCHE IGVDRTVFKV WMHNNKHIYS KRDHFSSTPT 240 PPPAVADTGI IDSCLPSPAG GSYIHQAHIA EHKENITNHH PEISRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 5e-21 | 170 | 227 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 183 | RKRFRTKFTQDQKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678402943 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085755.1 | 2e-78 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 5e-59 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2G9HG83 | 7e-84 | A0A2G9HG83_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g067320.1.1 | 4e-72 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 5e-49 | homeobox protein 30 |
Publications ? help Back to Top | |||
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