PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678401069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 22137.7 Da PI: 7.5574 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F + L H+r+H 678401069 125 HECLICGSEFASGQALGGHMRRH 147 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.1E-8 | 68 | 94 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.94E-6 | 69 | 91 | No hit | No description |
SMART | SM00355 | 5.4 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.346 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.94E-6 | 120 | 147 | No hit | No description |
PROSITE profile | PS50157 | 9.058 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.7E-10 | 125 | 149 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEYLSASDGL VIVKGKRAHR PPASSGSTSS GGEGGFVGSE DEDMAKCLML LAHGAVPAAG 60 MDVVGGGRFE CKTCFRNFPS SQALGGHRTS HKKQRNNVGE TDRNKASEER FVKLNDHLSR 120 ASKSHECLIC GSEFASGQAL GGHMRRHRPP PGTTSKTTSS GLKHEVSSDG KEPEIVLLLD 180 LNLPAQPEED HSSRNPDFSA AAMAAGCCY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678401069 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613500.1 | 3e-38 | PREDICTED: zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 6e-30 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A2G9GNU5 | 3e-38 | A0A2G9GNU5_9LAMI; Uncharacterized protein | ||||
STRING | XP_009613500.1 | 1e-37 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-30 | C2H2 family protein |
Publications ? help Back to Top | |||
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