PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678400949
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 788aa    MW: 86610.8 Da    PI: 6.9705
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678400949genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23160261199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv ++++ +gD v+F   + +++el++
  678400949 160 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-EPRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSVFVGQKNIMSGDAVLFL--RGEDGELRL 256
                99****************************853.4456789************************************************..449999*** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  678400949 257 GIRRA 261
                **996 PP
2Auxin_resp86.64.9e-29286365182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s+k+ F+v+Y+Pr   ++Fv+++ek++k++ +++ +G+ fk++f+ +ds++r+  G+v+g+sd+dp+rWpnSkW +L
   678400949 286 VADALSKKKSFSVFYSPRGNYPDFVIPYEKYLKSTASPIPIGTAFKLRFDLDDSPHRS--GVVTGISDVDPYRWPNSKWNCL 365
                 68899****************************************************9..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-43151274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-39153273IPR015300DNA-binding pseudobarrel domain
CDDcd100175.87E-21158260No hitNo description
PROSITE profilePS5086312.999160262IPR003340B3 DNA binding domain
PfamPF023624.8E-21160261IPR003340B3 DNA binding domain
SMARTSM010192.2E-22160262IPR003340B3 DNA binding domain
PfamPF065071.7E-23287365IPR010525Auxin response factor
SuperFamilySSF542772.06E-9658738No hitNo description
PROSITE profilePS5174520.371659743IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MEIDLNHAVN DADKKKCISG NCVCGCCSST STTSCSSNAS SSCSVSAPLI CKELWHACAG  60
PLTSLPKKGN VVVYLPQGHL EHIFSASSLP PMEINTFGVP PHVFCRIVDV QLLANKENDE  120
VFTKLTLLPQ QEVITIDCGS DGGDEEGNPV LPSKSTSHMF CKTLTASDTS THGGFSVPRR  180
AAEDCFPPLD YNEPRPSQEL IAKDLHGVEW KFRHIYRGQP RRHLLTTGWS VFVGQKNIMS  240
GDAVLFLRGE DGELRLGIRR AVRPRNSLPD SITKSHSSCA SVLSPVADAL SKKKSFSVFY  300
SPRGNYPDFV IPYEKYLKST ASPIPIGTAF KLRFDLDDSP HRSGVVTGIS DVDPYRWPNS  360
KWNCLVVRWD DDLSGNPHDR VSPWDISFSA NCPPLGIEYS PSSRHKKLRS NMGCSISGGH  420
GILDFNESIR PSEVLQGQEN GGLVPPPYSS DPRRFELQKT VINHMANMME RTSYNEFLPN  480
QAPPTTFTGF LESNWFPGVL QGQEICSLRS VTGNRDLKHG GWSKPELGYG AYGSNHRPEM  540
SFYPLASEGV RNVTISKKGV YGMEHRPITP STIFNAHPVS HSLADPSLRS RCISEISGAV  600
RIPDENKAVK KPSSPAASGM PSSRSGHDRD KESSSGRKIF GFSLPDDLET RGLHGSSRRR  660
CIKVHKQGSL VGRAIDLSKL TTYDGLLIEL EGLFSMNGLL RDPREGWCVL YTDNDNDMMV  720
VGDDPWPEFV EVATMLHIYT QEEVEKLMII TNSDDTKSCL EEAHPPKASK PPPSAREMDG  780
SSAALVST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1055038619352Auxin response factor 1
4ldy_B1e-1055038619352Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678400949
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089883.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2G9H9450.0A0A2G9H945_9LAMI; Auxin response factor
STRINGSolyc11g069190.1.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000208390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]