PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678400707

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 438aa MW: 47595.4 Da PI: 7.7605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678400707	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.8e-10	261	308	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 678400707 261 AHSLAERVRREKISERMRILQDLVPGC----NKIAGKAVMLDEIINYVQSLQ 308 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.27E-16	255	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.52E-11	255	312	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.5E-17	257	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.466	257	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	261	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-10	263	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEKENLYLNC SFFNTSWDNG LMDHQNDPFE SALSSMVCSP TASNAANSGG CNFNGQHIVI 60 KELIGRLGGI CNSGEISAAN GGGGADASCY STPLNSPRRI NSSGVEKQRI RESLPEIRGG 120 GFSCFTNNSL VTDPGPDRGK IYECPTFAPQ QQALNAAPGD SIENSSLSEL IPANPRKRKA 180 PAKGRGKETS AIPPAKQVNA PSESYAKRCK SEENRSYSEK GDAIKVKPGV NHKQQKEDSK 240 APEPPKDYIH VRARRGQATD AHSLAERVRR EKISERMRIL QDLVPGCNKI AGKAVMLDEI 300 INYVQSLQRQ VEFLSMKLAT VTPRMDYNME TAVVKDVSMF LEDDLHTVVH MGFREDESQE 360 FPGSNRTSDH STHRAREGLE AVMLTSSMGI GGGGAISVRD DKGGGQLFYG LHPHGLPSGA 420 SVLVMVITPY PLDTTNRK

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEKENLYLNC SFFNTSWDNG LMDHQNDPFE SALSSMVCSP TASNAANSGG CNFNGQHIVI  60
KELIGRLGGI CNSGEISAAN GGGGADASCY STPLNSPRRI NSSGVEKQRI RESLPEIRGG  120
GFSCFTNNSL VTDPGPDRGK IYECPTFAPQ QQALNAAPGD SIENSSLSEL IPANPRKRKA  180
PAKGRGKETS AIPPAKQVNA PSESYAKRCK SEENRSYSEK GDAIKVKPGV NHKQQKEDSK  240
APEPPKDYIH VRARRGQATD AHSLAERVRR EKISERMRIL QDLVPGCNKI AGKAVMLDEI  300
INYVQSLQRQ VEFLSMKLAT VTPRMDYNME TAVVKDVSMF LEDDLHTVVH MGFREDESQE  360
FPGSNRTSDH STHRAREGLE AVMLTSSMGI GGGGAISVRD DKGGGQLFYG LHPHGLPSGA  420
SVLVMVITPY PLDTTNRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678400707

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084194.2	1e-101	transcription factor bHLH78
TrEMBL	A0A2G9GXS5	1e-105	A0A2G9GXS5_9LAMI; Uncharacterized protein
STRING	POPTR_0002s23650.1	5e-90	(Populus trichocarpa)
STRING	XP_009627868.1	2e-90	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-63	bHLH family protein