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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678398661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 47474.2 Da PI: 6.3361 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 8.8e-12 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tG+C yG+rC+F+H+p 678398661 51 DEPDCLYYLKTGFCGYGNRCRFNHPP 76 6899********************97 PP | |||||||
2 | zf-CCCH | 36 | 1.1e-11 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ 678398661 102 GEKECSYYIKTGICKFGVTCKFHHPQ 127 6789********************97 PP | |||||||
3 | zf-CCCH | 37.3 | 4.5e-12 | 270 | 295 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++++G Ck+G++CkF+H+ 678398661 270 PGQPECQYYLKNGDCKFGASCKFHHP 295 5789*********************8 PP | |||||||
4 | zf-CCCH | 31 | 4.5e-10 | 317 | 341 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++++G C yG++C+F H++ 678398661 317 ARICSHYSQNGVCEYGPSCRFDHPM 341 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.774 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.934 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-4 | 106 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.807 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 271 | 295 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 273 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 275 | 295 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 311 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-6 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.399 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 317 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 318 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MERYSETKAM EGVPLDPVEE WVAPVGETGL EEPLWQLGLG GYSQAYPERP DEPDCLYYLK 60 TGFCGYGNRC RFNHPPDRSM VMGDFRSGGM YPERTGQPVC QGEKECSYYI KTGICKFGVT 120 CKFHHPQPSG MHFPAPEQGP GPIGTPTAFA PPTIFHAVQG PSVQTSQQYG VIQGNWPITR 180 PTMLQGPYVP GNYGPLLFSS GIIPVPWTAY PGAPLSPGTS PGTQPAVGAD PIYSIAHLSP 240 AATAYSGPYI SIATGASSSS QKEVAFPERP GQPECQYYLK NGDCKFGASC KFHHPSEWNS 300 SRNFMLSPMG LPLRPGARIC SHYSQNGVCE YGPSCRFDHP MRTPGYSSSA SSLTDMPVAP 360 YTIGSTSLTL APSTFPSDRR PSLLADPFPP QMSSMSSASA SVGSIFSKSG PASQMSIQNS 420 DQTNIASDPG ISLSQGDDVK TSN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678398661 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858954.1 | 1e-177 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
TrEMBL | A0A2G9GS85 | 1e-172 | A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein | ||||
TrEMBL | A0A4D8Z7M8 | 1e-172 | A0A4D8Z7M8_SALSN; Uncharacterized protein | ||||
STRING | Migut.G00186.1.p | 1e-177 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-109 | C3H family protein |