PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678396860

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 264aa MW: 29037.2 Da PI: 9.59

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678396860	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	98	157	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg rknk++s 678396860 98 QQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGYRKNKRAS 157 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	85	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-34	99	155	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.115	101	155	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	103	139	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MKGSSNCPPS FSCLLLLTAS VFPSHCVDPP NLRRAKGNGF FSFPSSPGRE GVGLGCSLLR 60 RRSCKSFKKY PICLQETLES ILVSAKPHQE KKPRPADQQA LKCPRCDSIN TKFCYYNNYS 120 LSQPRYFCKS CRRYWTKGGT LRNVPVGGGY RKNKRASSFS SSKRSQDHQV TAATAPATTH 180 TIQSFPPVPY DPTLAVSAFQ KQSEFDMGIW GVPSLCDLGI WADPNLPIGD VVLGMNMNCS 240 SLFYGGMPGN QEAGTPFEAP NLQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678396860

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089362.1	2e-53	dof zinc finger protein DOF2.1
TrEMBL	A0A1Q3BTQ1	2e-52	A0A1Q3BTQ1_CEPFO; Zf-Dof domain-containing protein
STRING	XP_002532252.1	2e-49	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	2e-31	DNA binding with one finger 4.7