PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678396343
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 459aa    MW: 53021.2 Da    PI: 6.6864
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678396343genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix911.2e-2872157187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laL+e+r +++++++++++k+plW++vs+ m +++g++rs k+C+ek+enl k+ykkike++ +r++   +++++f+qlea
  678396343  72 RWPRQETLALLEIRASLDSKFKETNQKGPLWDQVSRIMsEQHGYQRSGKKCREKFENLYKYYKKIKERKAGRHD--GKRYRFFRQLEA 157
                8*************************************889*****************************9854..556*******85 PP
2trihelix37.46.8e-12320401283
   trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                W+++e+ +Li++r++me ++++   ++  lWee++ k++  g  +r+p +Ckekw+ + ++  k   ++k+  +e+ + c y++
  678396343 320 WSDSEINELIRLRTSMEMKFQQrMISESVLWEEIAVKLSYFGHaTRTPLMCKEKWDCICNEQLKGGGNKKR--KEEPKMCTYYE 401
                *********************725699***********9888779***********988776555544444..45666788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014479.42E-552140No hitNo description
PROSITE profilePS500906.87665130IPR017877Myb-like domain
SMARTSM007170.2869132IPR001005SANT/Myb domain
PfamPF138372.5E-2072158No hitNo description
CDDcd122033.52E-2072137No hitNo description
PROSITE profilePS500906.771312374IPR017877Myb-like domain
SMARTSM007170.0025316380IPR001005SANT/Myb domain
PfamPF138375.9E-9318401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MMEEEEDHFS DLRSFIHGGT GNGRPAISAS LFPATTSGHH DMLIFQPANA NPPPPPPPPQ  60
PPSAARDAVT GRWPRQETLA LLEIRASLDS KFKETNQKGP LWDQVSRIMS EQHGYQRSGK  120
KCREKFENLY KYYKKIKERK AGRHDGKRYR FFRQLEALYG DSYNYASTSN QPASFMETSL  180
SLSNYSEADA SSSEEGDDDD ADDTKNKTLR RWKSRMKDFI DANMKKLVDK QEAWMDKMMR  240
AIEDKDRERI QREEEWRRKD AARIEQEQEQ WARERVLIEA RDLALMEALH KLAGKEQQGS  300
LGENQQEDRN ETMTNRTDNW SDSEINELIR LRTSMEMKFQ QRMISESVLW EEIAVKLSYF  360
GHATRTPLMC KEKWDCICNE QLKGGGNKKR KEEPKMCTYY EPFAHQGGAA YVTNEGGYEP  420
RVARLSDRHG NSSPNTAAAT LSESCFRYLM GDGYGRIID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381390LKGGGNKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678396343
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094408.11e-141trihelix transcription factor PTL
SwissprotQ9LZS01e-107PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2G9G8M21e-144A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRINGVIT_08s0007g03820.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-102Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]