PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678395970

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 340aa MW: 37822 Da PI: 5.8579

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678395970	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86	4.7e-27	33	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e r+rrg +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e+k + e++s +++ ++l+ 678395970 33 RWTRQEILVLIQGKRAAEGRVRRGPgsrsslgpsHVQPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESKIKMETESFWVMRNDLR 127 8*******************98444555666599******************************************999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-11	33	122	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-5	33	98	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.47	33	99	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MLFDTVNLGE GPVDGRQTSG NGDDGGKASR LPRWTRQEIL VLIQGKRAAE GRVRRGPGSR 60 SSLGPSHVQP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DFKKIKEWES KIKMETESFW 120 VMRNDLRRER KLPGFFDREV YDILCGNKVA ADDSEEHLDT GSRLALAPLE DVDSESHDEG 180 VPEMLFDSGR SAAVDDALFS DLGEAGRSSG KRKETLHDIP APAPISVSEK HYQSDPHDPT 240 QEGTHAEKES RPETEAGEPE EGKKRMRYDE VDDERGPASG SIEQQLVAAL EKNGRILSSQ 300 LEAQNTHLQL DREQRDQHVN SLLAVLNKLA DALGRIAEKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678395970

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086880.2	1e-130	LOW QUALITY PROTEIN: trihelix transcription factor ASR3
Refseq	XP_012848234.1	1e-130	PREDICTED: uncharacterized protein LOC105968158
Swissprot	Q8VZ20	2e-92	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A022QLL1	1e-124	A0A022QLL1_ERYGU; Uncharacterized protein
STRING	Migut.K01061.1.p	1e-129	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-88	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]