PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678393364

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TALE

Protein Properties

Length: 509aa MW: 57415.4 Da PI: 7.1282

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678393364	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	368	405	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps++++ L++++gL+++qV++WF N R + 678393364 368 FEHflHPYPSEADKHLLSRQTGLSKNQVSNWFINARVR 405 664459******************************88 PP
2	BELL	101.9	4.8e-33	228	298	1	71
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 er++ q++k kLls+l+eV++rY +y+eq+q++++ F+ ++g g+a+pYt+lA+ka+SrhFrc+kdaia+ 678393364 228 ERADYQRRKMKLLSMLDEVEERYMRYCEQMQALVNWFDSMVGRGAAAPYTALAQKAMSRHFRCMKDAIAGE 298 68999***************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.6E-51	165	297	IPR006563	POX domain
Pfam	PF07526	2.2E-45	171	296	IPR006563	POX domain
PROSITE profile	PS50071	12.228	346	409	IPR001356	Homeobox domain
CDD	cd00086	1.92E-10	349	410	No hit	No description
SMART	SM00389	7.2E-9	349	413	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.25E-17	351	417	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-28	353	415	IPR009057	Homeodomain-like
Pfam	PF05920	5.2E-18	366	405	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MHRQGEWIMK GQELDMQAAG EFTRNPDYVT GEMLAEFVTA GEGPSMVEEN QIQPTFWWPE 60 KQHLSVGVVN GAAAEELHFM NNQIKDSSSS SSSTSPYLHQ LVQAGTHPQN LFNWADPGGD 120 GSLRTGNFLS LSPSLRNAEA NKLHKMNVEQ TELLFRSQGI GLSNYSLANF LRNSRYLRPS 180 QELLQEFCCV GRGQFKNLKL RSHERNPNSG GSSKASQSKD RNSLSPSERA DYQRRKMKLL 240 SMLDEVEERY MRYCEQMQAL VNWFDSMVGR GAAAPYTALA QKAMSRHFRC MKDAIAGELK 300 SACQLLGDKD VAGSRGLTKG ETPRLKMLDQ RYRQQKSLQQ MAVIDPESWR PERGLPERSV 360 NILRSWLFEH FLHPYPSEAD KHLLSRQTGL SKNQVSNWFI NARVRLWKPM VEEMYQQELH 420 EAQQQEAANP AAPQPNINNA AENDLSESGA ISSSSAEAIA EISRCYGTKK TDGCDGNPVA 480 GDVSLTLELR RSENLPNMRQ LSIRDFEAY

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MHRQGEWIMK GQELDMQAAG EFTRNPDYVT GEMLAEFVTA GEGPSMVEEN QIQPTFWWPE  60
KQHLSVGVVN GAAAEELHFM NNQIKDSSSS SSSTSPYLHQ LVQAGTHPQN LFNWADPGGD  120
GSLRTGNFLS LSPSLRNAEA NKLHKMNVEQ TELLFRSQGI GLSNYSLANF LRNSRYLRPS  180
QELLQEFCCV GRGQFKNLKL RSHERNPNSG GSSKASQSKD RNSLSPSERA DYQRRKMKLL  240
SMLDEVEERY MRYCEQMQAL VNWFDSMVGR GAAAPYTALA QKAMSRHFRC MKDAIAGELK  300
SACQLLGDKD VAGSRGLTKG ETPRLKMLDQ RYRQQKSLQQ MAVIDPESWR PERGLPERSV  360
NILRSWLFEH FLHPYPSEAD KHLLSRQTGL SKNQVSNWFI NARVRLWKPM VEEMYQQELH  420
EAQQQEAANP AAPQPNINNA AENDLSESGA ISSSSAEAIA EISRCYGTKK TDGCDGNPVA  480
GDVSLTLELR RSENLPNMRQ LSIRDFEAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	355	413	5	63	Homeobox protein Meis2
3k2a_B	2e-16	355	413	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678393364

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074481.1	1e-162	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-120	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2G9G0C1	1e-166	A0A2G9G0C1_9LAMI; Transcription factor MEIS1
STRING	XP_009614985.1	1e-142	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-117	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]