PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678391280

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 367aa MW: 40709.6 Da PI: 7.035

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678391280	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.5e-34	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFveav++LGG+ekAtPk++++lm+++gLtl+h+kSHLQkYRl 678391280 38 KPRLKWTPDLHQRFVEAVNHLGGAEKATPKSVMKLMGIQGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.097	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	36	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	8.8E-10	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	132	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MYHQHHPGQS LTPERHLFVQ GMKNGSGDLG LVLSTDAKPR LKWTPDLHQR FVEAVNHLGG 60 AEKATPKSVM KLMGIQGLTL YHLKSHLQKY RLSKSLCGQA NNSSNKAATG DRTTSTTPPS 120 NQNTPTHTNK NIHIGEAIQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ SVLEKAQETI 180 GTQNLGTLNL EEAKVHLSDL VSEVSTQYLT SAFPGMKELE DICLQKNTLS RPVAQSMDSC 240 TTSFECSIRD RESYNGLMGF RPVSFRSPMD SQHEKKIENT DLGATEYLKE SRNIFSTERN 300 NAEKGSAAET DSSNLTMSIG VPESNGSIAS GLKLQSLSSS PLDLNTYEEN TAPSLSNQLD 360 LNGFCWN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MYHQHHPGQS LTPERHLFVQ GMKNGSGDLG LVLSTDAKPR LKWTPDLHQR FVEAVNHLGG  60
AEKATPKSVM KLMGIQGLTL YHLKSHLQKY RLSKSLCGQA NNSSNKAATG DRTTSTTPPS  120
NQNTPTHTNK NIHIGEAIQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ SVLEKAQETI  180
GTQNLGTLNL EEAKVHLSDL VSEVSTQYLT SAFPGMKELE DICLQKNTLS RPVAQSMDSC  240
TTSFECSIRD RESYNGLMGF RPVSFRSPMD SQHEKKIENT DLGATEYLKE SRNIFSTERN  300
NAEKGSAAET DSSNLTMSIG VPESNGSIAS GLKLQSLSSS PLDLNTYEEN TAPSLSNQLD  360
LNGFCWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678391280

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094327.2	1e-146	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-106	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2Z7B2B1	1e-135	A0A2Z7B2B1_9LAMI; Transcription factor
STRING	XP_002525443.1	1e-129	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-105	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]