PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678389589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 358aa MW: 39334.5 Da PI: 8.5938 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.3 | 1.7e-07 | 188 | 210 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H 678389589 188 HYCQICGKGFKRDANLRMHMRAH 210 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 316 | 331 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L+ H+ 678389589 316 CGTTFSRKDKLMGHLA 331 **************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.37E-6 | 186 | 213 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 188 | 214 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 188 | 210 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 188 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 190 | 210 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 78 | 246 | 279 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 284 | 306 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MISGATSSSY SLPIHGGIHE VHDLSETNSS SFLFNMSVLK EKVHQIQSLA SVWMSPESPQ 60 MAVALPTMAT LIQDIIVTAS SMMFSCQQMA IGSPAAFELS SQRSKMAAEI VNAGSRGGVV 120 RGFPSDQVDD AWCSNNQSQY NNSNEDLGRR IDGGFRRGTA EKREIVDGSG NYDIVELDAA 180 DLLAKYTHYC QICGKGFKRD ANLRMHMRAH GDEYKSSAAL SNPMKNNPEY GGGSESTIAP 240 KPPRKYSCPQ EGCRWNKNHP KFQPLKSMIC VKNHFKRSHC PKMYVCKRCN RKQFSVLSDL 300 RTHEKHCGDL KWQCSCGTTF SRKDKLMGHL ALFVGHSPAV NSTAADAGPQ NSAPLGES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678389589 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089967.1 | 1e-145 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q0WT24 | 1e-108 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A2G9G3S9 | 1e-141 | A0A2G9G3S9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02542.1.p | 1e-137 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11265 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-109 | C2H2 family protein |