PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678385575
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 335aa    MW: 36877.9 Da    PI: 5.6984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678385575genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11173218555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+ellP+a      K +Ka +Le+ ++Y+k Lq
  678385575 173 HSIAERLRRERIAERMKALQELLPNA-----NKADKALMLEEIIDYVKFLQ 218
                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-16166227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-11166222No hitNo description
PROSITE profilePS5088816.52168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVRLDGEREL PDMDSVNLLL NLQQYPSTPQ IQTEVLAPLE FDPASTHDDF LEKMLSSVPA  60
SAFPWGEDQQ PLAALGNSGD HLPTVVVHQE IKHLEASSRI LQQQLAQPRG LTAGNGPTSS  120
ADQNDVTERA VAQPQTQNSG SPTATAIGSC RRNTMTQSRQ RVRARRGQAT DPHSIAERLR  180
RERIAERMKA LQELLPNANK ADKALMLEEI IDYVKFLQLQ VKVLSMSRLG CCPPANGVSS  240
SVAANGKSQR GDDREATAAH EAEVAKLMEE DMGAAMQYLQ GKGLCLMPIS LNLNFASETL  300
RILMVDAFFR CISTCQMSYS ILCLQTKVYL KDQET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678385575
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078667.13e-79transcription factor bHLH66
SwissprotQ8S3D53e-61BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A0H3Y7K91e-76A0A0H3Y7K9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.K00336.1.p6e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-51LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]