PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378769
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 513aa    MW: 57604.5 Da    PI: 6.573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378769genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18153243199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k l++s+v++  ++ lp +f++ h   + +++t++le+esg+++ +k+i  k++    l++GW++Fv  n+L egD+++F+l++    +l+v ++r+
  678378769 153 FLKPLVRSHVGSCFWMGLPVPFCRLHL--PSKDTTVILENESGEEFPIKYIAHKTG----LSAGWRKFVAGNKLLEGDVLIFQLTK--PCRLKVYIIRA 243
                89*********************9995..346789***************655555....***********************976..34469998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-21147244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-19148244IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-23151242No hitNo description
PfamPF023626.5E-16153243IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084153244IPR003340B3 DNA binding domain
SMARTSM010194.9E-20153244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MKLKFVHQHP ETRPGDDQEA APEELEVKEM EVAQIPVPSE DDPVKESSSP LDATPVSASD  60
SLLVSGKRKR KPKEVVDEFP PVFRKKKKKP SSSKQRVSSF ASFDWLMSLG MHDSGGSWTS  120
SMGGSSVSAQ FKSPTVVRAE EVQSSLGNGQ PTFLKPLVRS HVGSCFWMGL PVPFCRLHLP  180
SKDTTVILEN ESGEEFPIKY IAHKTGLSAG WRKFVAGNKL LEGDVLIFQL TKPCRLKVYI  240
IRANDLNEVD GALSLLNLDS RIKKNEAEAN LDAVSEERKH KKPLTLAAAE RKNHTGSVDP  300
QHLHVDEQLG NDSDEVASEV LESIKAPGSS CNLKDIKSFE EFHIVVNGVC IDSDLPEQIR  360
KQYYDLCYSR NALLHDRLLP GLYRKLASSM IVETVNIADS IRGCTLMTPR KDFEVWEKSL  420
RSFELLGLDV GFLRARLHQL VKLAFDSEGA SYIRGYFEAR DEQRRVEDEI HHLEEKLAAL  480
KELSLKYERE TESSKTTVDR LSMKFKEAVS DPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16888KRKPKEVVDEFPPVFRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378769
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.10.0B3 domain-containing protein Os01g0234100
TrEMBLS8C6C80.0S8C6C8_9LAMI; Uncharacterized protein
STRINGMigut.H00442.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-34B3 family protein