PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378202
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31674.7 Da    PI: 5.1414
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378202genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.3e-1761114356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t +q++eLe+ Fe ++++  e++ +LA +++L+ rqV vWFqNrRa++k
  678378202  61 KKRRLTINQVKELERNFEVDNKLGPERKMKLALEVSLQPRQVAVWFQNRRARWK 114
                4568999**********************************************9 PP
2HD-ZIP_I/II114.75.7e-3760152193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ +qvk LE++Fe ++kL perK++la e+ lqprqvavWFqnrRAR+ktkqlE+dy +Lk+++++lk+++e+L+ e+++  +e++e
    678378202  60 EKKRRLTINQVKELERNFEVDNKLGPERKMKLALEVSLQPRQVAVWFQNRRARWKTKQLERDYVVLKSNCNSLKHDMEKLQLENQAFLTEIEE 152
                  69***********************************************************************************99888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.26156116IPR001356Homeobox domain
SuperFamilySSF466893.34E-1856118IPR009057Homeodomain-like
SMARTSM003893.3E-1459120IPR001356Homeobox domain
CDDcd000868.51E-1561117No hitNo description
PfamPF000461.4E-1461114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1868115IPR009057Homeodomain-like
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PfamPF021833.5E-13116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKTVVSAKPT RMKKLYGVDS FSTLMPISST STGENNQGNG PILIREFGTM LDEELNPVFE  60
KKRRLTINQV KELERNFEVD NKLGPERKMK LALEVSLQPR QVAVWFQNRR ARWKTKQLER  120
DYVVLKSNCN SLKHDMEKLQ LENQAFLTEI EELKSKLNED GEIQTKTKIQ ERKKEAIAEK  180
MKLVTVPVQF SGGSYDSDSS GVMNNDDNNT AVSCFLPTPS CFKLADGDGD VEHSLLGEEE  240
DSCSCLFSVD QAPTLHWHNS TDNDWDPFGN TPMTFERQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097532.14e-60homeobox-leucine zipper protein ATHB-6
TrEMBLA0A2G9I4D67e-63A0A2G9I4D6_9LAMI; Transcription factor HEX
STRINGMigut.L00161.1.p7e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-43homeobox protein 16