PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678375690
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 667aa    MW: 73920.9 Da    PI: 6.7672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678375690genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0595119526
                --SGGGGTS...--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                lC   a++G    C yG++C+F+H+
  678375690  95 LCAEVAKSGdasSCVYGANCRFSHD 119
                6888889999999***********7 PP
2zf-CCCH18.24.6e-06134153524
                --SGGGGTS--TTTTT-SS- CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFa 24 
                lC+f a  G C++G  C+Fa
  678375690 134 LCPFLAVLGPCPFGLACRFA 153
                8******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.54595121IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.08134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.708.1E-77311554IPR013785Aldolase-type TIM barrel
SuperFamilySSF513952.81E-67315628No hitNo description
CDDcd028015.20E-98315550No hitNo description
PfamPF012073.8E-55318585IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360399417IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDRSDTVGSI ETDVTPVEGS PSLEELVAKS IAPVKREFLC PPPTRDCNKK TVDEADGREG  60
EGNAAGSGSS VLREKKSKRQ LKRERRQELK SPLHLCAEVA KSGDASSCVY GANCRFSHDV  120
EAFKAHKPED LDGLCPFLAV LGPCPFGLAC RFAGTHKADG GQLSSEMVNG GKRESEMNVL  180
KKDVQKLLWK NKMKFPKANA SLKVLGLLNK MKITDGSGDD VVNGCLRDAN DSKDALDSSG  240
HTETADGDGM DNELRPPPKK TKCSSDEACI LPSNDDENPQ NERSSIPDHE HAMYDNDKSL  300
KLHQREKKLI DFSEKLYLAP LTTVGNLPFR RICKVLGADV TCGEMAMCTN LLQGQASEWA  360
LLRRHSSEDL FGVQICGAYP DTVAKTVELV EQECTVDFID INMGCPIDIV VNKGAGSALL  420
TKPMRMKGVV EACSRAINTP VTIKVRTGYF EGKNRIDTLI QDIGDWGASA VTVHGRTRQQ  480
RYSKLADWDY IYQCARAAPK TLQVLGNGDV FSYDDWNRHK ANCPELSTCM IARGALIKPW  540
IFTEIKEQRH WDISSGERLD ILKDYVRFGL EHWGSDSKGV ETTRHFLLEW LSYSCRYIPV  600
GLLDVIPQRI NWRPPSYFGR NDLETMMASD SAADWVRISE MLLGKVPAGF TFSPKHKSNA  660
YDKAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2631555930266tRNA-dihydrouridine synthase B
6ei9_B1e-2631555930266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678375690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088543.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2G9G3E20.0A0A2G9G3E2_9LAMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGMigut.B00123.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]