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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678375543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ARF | ||||||||
Protein Properties | Length: 679aa MW: 75047.1 Da PI: 7.2284 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.6 | 1.3e-19 | 138 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE.......................EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy.....................rkksgryvltkGWkeFvkang 73 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iy +++++r++lt+GW+ Fv+ ++ 678375543 138 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVARDLHGTEWKFRHIYrgkfsvsdpsdcnfadcltckTGQPRRHLLTTGWSAFVNKKK 236 99****************************963.3445679***********************************999999999*************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 L +gD v+F + ++el+++v+r+ 678375543 237 LVSGDAVLFLR--GGDGELRLGVRRA 260 **********4..3789999999986 PP | |||||||
2 | Auxin_resp | 104.2 | 1.6e-34 | 283 | 364 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+v+YnPra++se +v+++k+ k+l++++s GmRfk+++ete+ss +r sG++vgv d+dp rWp SkW++L 678375543 283 VVKAVSKQTAFDVCYNPRACSSEVIVPFAKFAKSLTQPFSCGMRFKVRYETEESSDKRSSGVIVGVGDADPARWPSSKWKCL 364 6799*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-37 | 135 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-38 | 135 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.76E-19 | 136 | 259 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 138 | 261 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-14 | 138 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-8 | 138 | 197 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-7 | 216 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-29 | 284 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MVSGLIDLNT VNDEDDATAA APERSSSEVC MELWHACAGP LISLPKKGSA VVYLPQEQFE 60 LPSENSPAAD GHQLPPHVFC RVVDVKLHVE SEYDEVYAQV SLLPDQQIER EWKEGTLETH 120 AEDEVLDTPV KALTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA 180 RDLHGTEWKF RHIYRGKFSV SDPSDCNFAD CLTCKTGQPR RHLLTTGWSA FVNKKKLVSG 240 DAVLFLRGGD GELRLGVRRA GQAKPGASVR PPKSHFNGSI ASVVKAVSKQ TAFDVCYNPR 300 ACSSEVIVPF AKFAKSLTQP FSCGMRFKVR YETEESSDKR SSGVIVGVGD ADPARWPSSK 360 WKCLLVRWDD MDANHINRVS PWEIEVSGSA CGAPNGFVLP ATKRSRIVFH SSKPDPPDCD 420 ADIREPSRFQ KVLQGQEVFG FRSPYAGADG ARKHSFDLGC YSRLTSGSMA PDGPFQYHKV 480 LQGQETTSIQ SFRRGREFDH TKESSTGGVQ VFRHGNSWTS VYNTSGHHAS SIPRVSSPSS 540 VLLLQQPSTL TAQSFSRSYK SELDGESPGL PRFVSQRDSR MMNHSRFGTG HAYRKGLNRE 600 EESQAALAEP HQLFGIPLSL TTNEEPLMKR KHEDTFSLSP AFGANSDSDH GVSEKNLFEP 660 RLVVSGLTNL RDRMLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 5e-98 | 26 | 385 | 16 | 353 | Auxin response factor 1 |
4ldw_A | 5e-98 | 26 | 385 | 16 | 353 | Auxin response factor 1 |
4ldw_B | 5e-98 | 26 | 385 | 16 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678375543 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554020.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Swissprot | O23661 | 1e-167 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2G9GLF4 | 0.0 | A0A2G9GLF4_9LAMI; Auxin response factor | ||||
STRING | Migut.M01096.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-169 | ARF family protein |