PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678371275
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 325aa    MW: 36349.8 Da    PI: 7.9332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678371275genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13240265126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ +++tG C+y   C+FaHg
  678371275 240 WKTELCNKWQQTGRCPYSIECQFAHG 265
                8************************8 PP
2zf-CCCH18.73.1e-06278303126
                --S---SGGGGTS.--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                ykte Cr  +  G  C+yG rC+F H+
  678371275 278 YKTEVCRMVLN-GvACPYGHRCHFRHS 303
                9******9999.67**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.2E-17234271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-10236271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666239267IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-7239266IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10240265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-11273303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-7274304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469277305IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5277304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQRQAMEGEI SFSGLENANA ASSSTHFPGD DDYSAALYPY SSPPNYSVLV DHSNNGETEG  60
SCWSRIQQQK LYQDLLERYQ IAYAQLRIVA KQAQDLHQEN VNLKMVNHEM KKHLDMLLGS  120
TPFQGLDFGP RKDRYGGLSL GCEEGANENV CAARIPKSAV DSAQIAPGVN DRFQLPKSIS  180
VRSSGYLKSS RSSGSSASTV ACLKASSRLN FDSEKERVYV KRGKEEEPPL ALEVYNQGMW  240
KTELCNKWQQ TGRCPYSIEC QFAHGIGELR PILRHPRYKT EVCRMVLNGV ACPYGHRCHF  300
RHSLTSQEKK DVADSKSLDP LASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-192403051075Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678371275
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076170.11e-101zinc finger CCCH domain-containing protein 15
RefseqXP_011076178.11e-101zinc finger CCCH domain-containing protein 15
RefseqXP_011076187.11e-101zinc finger CCCH domain-containing protein 15
TrEMBLS8DG718e-97S8DG71_9LAMI; Uncharacterized protein
STRINGMigut.L01008.1.p7e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-49C3H family protein