PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678370781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23328.9 Da PI: 9.2168 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2.1e-21 | 18 | 66 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien s rqvtfskRr g++KKA+EL++L +aeva+i+ s +++++ 678370781 18 KKIENLSSRQVTFSKRRGGLFKKASELCILSGAEVAIIVHSFGKHVFTF 66 68****************************************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.123 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-29 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.55E-26 | 11 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.81E-32 | 11 | 83 | No hit | No description |
PRINTS | PR00404 | 5.3E-18 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-21 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-18 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-18 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSGARIKMTQ GRKKIEIKKI ENLSSRQVTF SKRRGGLFKK ASELCILSGA EVAIIVHSFG 60 KHVFTFGHPT PEAVVERFLN GSALEMSNTP PATMPEFKHH YSDICKELEM EKKRMQGIEE 120 VKRGQGHRGG DWWNNVIVDE LKLEELEQFA AAMEELVKNL LLRADDLRLA QTTPISFRTP 180 PEAMRSPDFG AVVLLNQPRG SDNFHGL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678370781 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835329.1 | 6e-63 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G9HQQ6 | 5e-67 | A0A2G9HQQ6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01120.1.p | 2e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-37 | AGAMOUS-like 62 |