PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678370550
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 289aa    MW: 31400.9 Da    PI: 5.7142
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678370550genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.6e-17184218135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  678370550 184 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 218
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-781263IPR016679Transcription factor, GATA, plant
SMARTSM004018.1E-17178228IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.255178214IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-14179215IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-14180241No hitNo description
CDDcd002023.98E-13183230No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003201.0E-14184218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MECFAVDYAE LDKDNGGAHF TVEDLLDFSQ EDENMPNVFF DGVAANSGDS ATVTPVESCN  60
SSVSGGGEAH FYGNPSQFPG NELCVPYDDL AELEWLSNFV EDSFSADVIP AGPDAAASAA  120
AVAATEPLHF PCDVTVPGKA RSKRSRAPPC DWSSRLLRVA VPDTTTTTTT TTTTTTTEAS  180
GRKCLHCASE KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF VSAKHSNSHR  240
KVLELRRQKE LQRQQQLIGH VSIFNGCDEL LLHHHNTTVV NGHDYRHVM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678370550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851153.11e-125GATA transcription factor 9-like
SwissprotO826322e-66GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A4D8YRS51e-130A0A4D8YRS5_SALSN; Uncharacterized protein
STRINGMigut.I00908.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-58GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]