PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678367682

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 357aa MW: 40326.7 Da PI: 7.6761

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678367682	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.6	3.3e-13	3	49	39	87
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e g++rs k+C+ek+enl k+ykk+keg+++r ++ +++++f+qlea 678367682 3 EEYGYQRSGKKCREKFENLYKYYKKTKEGKSRR--QDGKHYRFFRQLEA 49 578**************************98..55667*****85 PP
2	trihelix	42.7	1.5e-13	244	311	2	69
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+++ev +Li +r+ ++ ++g +++ Weev+++m + g+ rs+ +Ckekw++ln k ++ ++ 678367682 244 WSDDEVTKLIHLRSGLKLGAESGIPDEAMWEEVARRMGSFGYVRSALMCKEKWDSLNANGGKKRKENE 311 ********************************************************976544444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-8	3	50	No hit	No description
PROSITE profile	PS50090	7.027	244	300	IPR017877	Myb-like domain
Pfam	PF13837	5.7E-10	244	315	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSEEYGYQRS GKKCREKFEN LYKYYKKTKE GKSRRQDGKH YRFFRQLEAL YGETSKSASE 60 ADASHFHGGG NFRQGFPNDD VSLAINQGTP FSAPNNNNAS NCGDSAEISS GESDPREEEE 120 EGEAASGGDQ KGKKQKRGLK GKIMSFINQQ MTKLMEKQEA WMEKVMNTIE VKEQERILRE 180 ENWRKQDAAR IEREHSFWAG EKAWIEARDT ALMEAFHQAA SKHNKYMDFM PGKATSGSFN 240 TALWSDDEVT KLIHLRSGLK LGAESGIPDE AMWEEVARRM GSFGYVRSAL MCKEKWDSLN 300 ANGGKKRKEN ENPKSGSCYE NVGGSLYCDT SERGGVGLPM SIGSHSNHHH HHWGSGF

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSEEYGYQRS GKKCREKFEN LYKYYKKTKE GKSRRQDGKH YRFFRQLEAL YGETSKSASE  60
ADASHFHGGG NFRQGFPNDD VSLAINQGTP FSAPNNNNAS NCGDSAEISS GESDPREEEE  120
EGEAASGGDQ KGKKQKRGLK GKIMSFINQQ MTKLMEKQEA WMEKVMNTIE VKEQERILRE  180
ENWRKQDAAR IEREHSFWAG EKAWIEARDT ALMEAFHQAA SKHNKYMDFM PGKATSGSFN  240
TALWSDDEVT KLIHLRSGLK LGAESGIPDE AMWEEVARRM GSFGYVRSAL MCKEKWDSLN  300
ANGGKKRKEN ENPKSGSCYE NVGGSLYCDT SERGGVGLPM SIGSHSNHHH HHWGSGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678367682

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094408.1	1e-94	trihelix transcription factor PTL
TrEMBL	A0A2G9G8M2	5e-95	A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRING	XP_009613783.1	4e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	3e-45	Trihelix family protein