PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678367152

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 356aa MW: 39796.9 Da PI: 6.867

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678367152	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.5e-07	152	222	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as...................kapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + ++f +L +++P k p ++K ++L A++Y+k+Lq 678367152 152 HIIAERKRRELLSQRFITLSTVVPGiKKvslsltkilhcsvmmsilsKYPLMQMDKNSVLGCAINYLKHLQ 222 899********************7779*************9999999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-13	139	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.252	147	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	152	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-6	152	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-11	152	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-8	153	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDSYVLSEMG LESSVFVDDF IDDMLDEDEL ALLQQGLEAC LAAPPHPEPE PLELMKTKRK 60 KKKKAGSMKK NLRRACSSPM ILSFGSNNGD LKNSENRRNR AELSPEEEAA VSEALRCCSN 120 AAPGSEYQSE AAATQLSKKT KRIRPPSQTY DHIIAERKRR ELLSQRFITL STVVPGIKKV 180 SLSLTKILHC SVMMSILSKY PLMQMDKNSV LGCAINYLKH LQEQVERLEA RAGNQPRDSA 240 VMVKKSHIIG FAENKGGGYM EEEEEEEEEE QALPAVEARI KERFVILRIH CQIQKGVLVN 300 LLRQVEDLHL AVVTTNLTAL GGLVLDITIT AEMEKEFNAT VKEIARRLRA ALQPPA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDSYVLSEMG LESSVFVDDF IDDMLDEDEL ALLQQGLEAC LAAPPHPEPE PLELMKTKRK  60
KKKKAGSMKK NLRRACSSPM ILSFGSNNGD LKNSENRRNR AELSPEEEAA VSEALRCCSN  120
AAPGSEYQSE AAATQLSKKT KRIRPPSQTY DHIIAERKRR ELLSQRFITL STVVPGIKKV  180
SLSLTKILHC SVMMSILSKY PLMQMDKNSV LGCAINYLKH LQEQVERLEA RAGNQPRDSA  240
VMVKKSHIIG FAENKGGGYM EEEEEEEEEE QALPAVEARI KERFVILRIH CQIQKGVLVN  300
LLRQVEDLHL AVVTTNLTAL GGLVLDITIT AEMEKEFNAT VKEIARRLRA ALQPPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	63	KRKKKKK
2	59	69	KKKKKAGSMKK
3	155	160	ERKRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678367152

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1760	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-32	bHLH family protein