PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678366121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 237aa MW: 26473.2 Da PI: 10.0131 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 50.3 | 1e-15 | 1 | 65 | 32 | 97 |
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpv 97 +aerda+i+ernla+sekk a+aerdma l+rd+a+aern a++erdn++++l+ ++++++ +p 678366121 1 MAERDAAIQERNLAISEKKTALAERDMAILHRDAAIAERNTAILERDNAIATLQC-RHGVKHIQPR 65 78**************************************************998.5556666655 PP | |||||||
2 | GAGA_bind | 242 | 4.1e-74 | 86 | 237 | 154 | 301 |
GAGA_bind 154 qrakkpkekkak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245 +r+k+p+e k+ + kk s++sk+ k+e++d++ k++++++ +v++De+t+PvPvCsCtG+ r CYkWG+GGWqS+CCt+++S+yPLP 678366121 86 HRGKHPREMKHIasASKKASKASKRVIKQEGHDSSnrliapCKQDWQEQ----HQVAFDETTMPVPVCSCTGVVRPCYKWGSGGWQSSCCTMNLSMYPLP 181 3333343333322133444455555555555552223333366666666....69********************************************* PP GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 + +++r+aR++grKmS++af klL++La++G+dlsnpvDLk+hWAkHGtn+++tir 678366121 182 ALPNKRHARVGGRKMSGSAFGKLLSRLAENGHDLSNPVDLKEHWAKHGTNRYITIR 237 *******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 6.5E-84 | 1 | 237 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 2.0E-93 | 1 | 237 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MAERDAAIQE RNLAISEKKT ALAERDMAIL HRDAAIAERN TAILERDNAI ATLQCRHGVK 60 HIQPRIVEPQ YDSSSLSIEP PSMNPHRGKH PREMKHIASA SKKASKASKR VIKQEGHDSS 120 NRLIAPCKQD WQEQHQVAFD ETTMPVPVCS CTGVVRPCYK WGSGGWQSSC CTMNLSMYPL 180 PALPNKRHAR VGGRKMSGSA FGKLLSRLAE NGHDLSNPVD LKEHWAKHGT NRYITIR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678366121 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018628858.1 | 1e-105 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X3 | ||||
Refseq | XP_019244942.1 | 1e-105 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Swissprot | Q8L999 | 2e-92 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A076L2D6 | 1e-103 | A0A076L2D6_TOBAC; GAGA-binding transcriptional activator | ||||
TrEMBL | A0A1J6J273 | 1e-103 | A0A1J6J273_NICAT; Protein basic pentacysteine6 | ||||
TrEMBL | A0A1U7Y9Y3 | 1e-103 | A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like | ||||
STRING | XP_009798749.1 | 1e-104 | (Nicotiana sylvestris) | ||||
STRING | XP_009610156.1 | 1e-104 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5353 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42520.2 | 2e-92 | basic pentacysteine 6 |