PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364665
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 262aa    MW: 29322.8 Da    PI: 7.329
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364665genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-06102121120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C+k+F+r  n++ H+
  678364665 102 FSCPVCSKTFNRYNNMQMHM 121
                89*****************9 PP
2zf-C2H215.74.3e-05187209123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +Cgk F  + + ++H +++
  678364665 187 FSCRKCGKAFAVRGDWRTHEKNC 209
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-594125No hitNo description
Gene3DG3DSA:3.30.160.601.6E-6102121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.679102129IPR007087Zinc finger, C2H2
SMARTSM003550.054102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355250150182IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-7173207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-6173207No hitNo description
SMARTSM0035545187207IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MCSSEGFFNL ELEEDDDFST DLSLGPPGGR DHRIRNDFCT RVPVLNGDGG ENAVTVALHI  60
GLPNGGGGGG SCSEGGGNLS EMGEGRYWIP TAEQILVGPT QFSCPVCSKT FNRYNNMQMH  120
MWGHGSEYRK GPESLKGTKQ GSAILKLPCY CCAEGCKNHI DHPRSKPLKD FRTLQTHYRR  180
KHGSKPFSCR KCGKAFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH VRAFGEGHAS  240
HYDNLYFHDH FVEADEMEQE QE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077223.11e-126zinc finger protein WIP6
SwissprotQ9FX681e-108ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A068TWE91e-116A0A068TWE9_COFCA; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-107C2H2-like zinc finger protein