PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364613
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 263aa    MW: 28543.9 Da    PI: 8.4084
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364613genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.62.1e-2451154196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                +C++C+vlr++C+++C+l+p++     pa+q+++  +++k++G++ +++l++a   + +    ++++sl+yeA+ r+ +Pv Ga+g++ ++++  +q+++
  678364613  51 SCNGCRVLRKGCSPECTLRPCLdwipsPASQANAVLFLAKFYGRAGLVNLINAGLGNLHpafVEIFKSLLYEACGRIINPVGGATGLMGSGEWARCQAAV 150
                6****************************************************955554334899*********************************99 PP

     DUF260  93 elal 96 
                +++l
  678364613 151 DAVL 154
                9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.76350159IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-1851151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLSLFFRSRR FIPRRGSLFF LPFLGILPVP NSFLLRFLFV RHLLPFGMRM SCNGCRVLRK  60
GCSPECTLRP CLDWIPSPAS QANAVLFLAK FYGRAGLVNL INAGLGNLHP AFVEIFKSLL  120
YEACGRIINP VGGATGLMGS GEWARCQAAV DAVLDGSTLL TEVSGDEDSG GLLWDPVQSC  180
NIRRIKRSPA SSSTAAAATN EAPEKFTITG WEGRGDDNNF TSTGNVERAL RTPTPPPVPR  240
EPDEAPSPEP PLELTLGAKM SHL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076777.14e-64LOB domain-containing protein 42-like
SwissprotQ9CA307e-52LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2G9HYG42e-66A0A2G9HYG4_9LAMI; Uncharacterized protein
STRINGMigut.E00341.1.p4e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.18e-53LOB domain-containing protein 42