PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364609
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 318aa    MW: 36212.8 Da    PI: 8.6391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364609genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006257279123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + Cp C+++F++   L  H r+H
  678364609 257 HACPFCDRVFRNGQALGGHKRSH 279
                67******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.1190212IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663190212IPR007087Zinc finger, C2H2
SuperFamilySSF576674.53E-7190212No hitNo description
PfamPF139121.1E-7190214IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SuperFamilySSF576674.53E-7252279No hitNo description
PfamPF139121.3E-8256279IPR007087Zinc finger, C2H2
SMARTSM003550.034257279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307257279IPR007087Zinc finger, C2H2
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MACHSEKEKV LKDDSSWTRE SNKTAMDGFS DTESDQRRQR SSRRSSLRKQ QRMESVEDSP  60
FSSLFEIDGH EQVEVARCLM LLSRDQMNRG GGYSAVESSD NNSVVETKSS SIDMRMSKGK  120
KSGCRREESP EMKRTATEDD SDSGYFLDEN TQTESESKYG NNACKRLESR KATAAKNEQG  180
DEHLPKRSKF QCFNCNKIFN SYQALGGHRP CHRRISDHEP RYESGENSPE DDQRIRQRSS  240
KTPPRDKKSN AKKSKVHACP FCDRVFRNGQ ALGGHKRSHF MNAHGDTRNR APLMKPDQLD  300
LNLPAPEASE DASHGRFF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364609
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847770.18e-69PREDICTED: uncharacterized protein LOC105967696
TrEMBLA0A2G9HWQ16e-76A0A2G9HWQ1_9LAMI; Uncharacterized protein
TrEMBLA0A4D8YIE52e-73A0A4D8YIE5_SALSN; Heparanase 1
STRINGMigut.L01205.1.p3e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-24C2H2-like zinc finger protein