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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678364019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | DBB | ||||||||
Protein Properties | Length: 286aa MW: 32091.3 Da PI: 6.4932 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e++ ++ fC ++ lC dC H+ H+ 678364019 4 LCDVCEKNGASVFCAADEAALCVDCDRRVHHAnklagkHQ 43 7**************************9964446777776 PP | |||||||
2 | zf-B_box | 31.3 | 4.2e-10 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ lfC++++ lC+dC +++H+ Ht 678364019 55 STVCDICKERRAFLFCQQDRAILCRDCDVSIHRTnkHT 92 579*****************************778854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.893 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.4E-6 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.90E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.7E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.6E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.281 | 53 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.9E-8 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.82E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKILCDVCEK NGASVFCAAD EAALCVDCDR RVHHANKLAG KHQRFSIERP SSRDSTVCDI 60 CKERRAFLFC QQDRAILCRD CDVSIHRTNK HTQMHTRFLL IGLRVSSAPS SYSSSQEADS 120 FPTNVNCVSS KVAVDDNSNA NLMSASNISD HLLETVPGWQ FEDYFIDSSP PPYVLSKELN 180 NEQVLPMMGT EMPTNLCSFT SEELGFWVPQ STLYPTQSHP SHSIEPPFKS TTGTEEHFAK 240 KLKKRWIEDC CPLVPDLPEC FQVPASFFAF ANGEKLASKK PRLPNF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678364019 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835698.1 | 1e-72 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 4e-59 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A022RFS1 | 3e-71 | A0A022RFS1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.C00787.1.p | 5e-72 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 7e-59 | salt tolerance homolog2 |