PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678361025 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 22220 Da PI: 8.2226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00013 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H ++H 678361025 86 YKCTVCDKAFPSYQALGGHKSSH 108 9*************999999888 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00019 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F++ L H r+H 678361025 133 HQCSICQKCFPTGQALGGHKRKH 155 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.54E-10 | 85 | 155 | No hit | No description |
SMART | SM00355 | 0.0083 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.4E-13 | 86 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 133 | 155 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-9 | 133 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MALEALNSST AAMIIPPHRV DDLDAWRKSK RSKRQRRLHD PTPEEEYLAF CLIMLARGGD 60 GNFPPAGDSD FKKSDGECSP AIGNSYKCTV CDKAFPSYQA LGGHKSSHRV KSTPANDATP 120 PLPALSLSSN KLHQCSICQK CFPTGQALGG HKRKHYDGVI GGAALKSRST SSTGDRATIT 180 AVPCSFDLNL PAWTIPHDEE VESSPAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678361025 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088065.1 | 6e-51 | zinc finger protein AZF2-like | ||||
TrEMBL | A0A4D9BGD6 | 4e-49 | A0A4D9BGD6_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0014s01760.1 | 5e-47 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 2e-33 | zinc-finger protein 3 |