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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678358105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 26371.7 Da PI: 9.8123 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.9e-13 | 5 | 43 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rg W + Ede+l ++v+++G+++W++Ia++++ gR+++++ 678358105 5 RGHWRPAEDEKLRQLVAKYGPHNWNAIAEKLQ-GRSGEDL 43 899*****************************.****987 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 8.8e-17 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+ E+e+l+ +++ +G++ W+ Iar+++ gRt++ +k++w+ 678358105 93 RSPFTAGEEERLLACHQIYGNR-WAVIARYFP-GRTDNAVKNHWHV 136 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.311 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-10 | 4 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.24E-10 | 4 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-12 | 5 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 6 | 39 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.83E-10 | 8 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 76 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.75E-22 | 76 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.529 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-14 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 93 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-9 | 95 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVCTRGHWRP AEDEKLRQLV AKYGPHNWNA IAEKLQGRSG EDLFLFGQER WDIQLHSFLG 60 FDVHHHLYLH RIIFCRKSCR LRWFNQLDPR INRSPFTAGE EERLLACHQI YGNRWAVIAR 120 YFPGRTDNAV KNHWHVIMAR KCRAKSKSYN TSSEQQRPHN TKLHHTIVHQ DRSSKHVRFY 180 DFLQVRKTEA DGDEEEAEWS SQSKKAAVQF IDFLSLGSSS SSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 3 | 142 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678358105 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015096.1 | 1e-73 | transcription factor MYB52 | ||||
Swissprot | Q6R0C4 | 1e-60 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | B9SWD8 | 3e-70 | B9SWD8_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002530307.1 | 6e-71 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-60 | myb domain protein 52 |
Publications ? help Back to Top | |||
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