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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678357226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ARF | ||||||||
Protein Properties | Length: 861aa MW: 95653.8 Da PI: 6.5095 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.4e-23 | 161 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ + +++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ 678357226 161 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQTPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 256 99*****************************7655544..48************************************************..8899999* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ 678357226 257 LGIRRA 262 ***997 PP | |||||||
2 | Auxin_resp | 119.8 | 2.2e-39 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k++kal+ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k 678357226 287 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYLKALHhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVK 370 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-48 | 145 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-41 | 154 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.69E-21 | 160 | 261 | No hit | No description |
Pfam | PF02362 | 3.5E-21 | 161 | 262 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-24 | 161 | 263 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.323 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-34 | 287 | 370 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.14E-6 | 735 | 814 | No hit | No description |
Pfam | PF02309 | 2.0E-7 | 736 | 831 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.937 | 740 | 824 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MLFAIHHHPG SYCHQDFSCN YWASHISEEA AGKRMKLSTS AMGQQVHEGE KKCLNSELWH 60 ACAGPLVSLP TVGSRVVYFP QGHSEQVAAT TNKEVDAQLP NYPSLQPQLI CQLHNVTMHA 120 DGETDEVYAQ MTLQPLTPEE QKETYLPVEL GIPSRQPTNY FCKTLTASDT STHGGFSVPR 180 RAAEKVFPPL DFTQTPPAQE LIARDLHDVE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV 240 AGDSVLFIWN EKNQLLLGIR RASRPQNVMP SSVLSSDSMH IGLLAAAAHA AATNSCFTVF 300 YNPRASPSEF VIPLSKYLKA LHHTRVSVGM RFRMLFETEE SSVRRYMGTI TGICDLDPVR 360 WPNSHWRSVK VGWDESAAGE RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGASSFQE 420 AGGEEMSSLA WVRGEAGEAG FSAMNLQSVG MFPLMQQRFD PAVMRNDLGQ QYRAMLAAGL 480 YNFGGADLMK NQGMQFQSPV HYIHHYGGSN PLAQSQQVIS PPASSNMLSL QTQMLSNNLQ 540 RAPTQQEVAS PCKEHSGHHA YPETFLGQHE QLQLRQSSDV PSPSFVKSDF SEPDSRFPGQ 600 VARSGMQNMF GPMFQEGNSN LLNFSMPQQQ WTTPKFPQSP VGGSSNSISL ALYPGKDGSL 660 EQESLGAQNP SLFGANLDAS GLQLPTTMSS MGISSVQTDI SSLPLATTGF QGHLYGYMQD 720 SSEILQPTGH DHQPAPASAR TFVKVYKTGS VGRSLDIARF NSYQELRHEL GQMYGIEGLL 780 EDPQRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL SPEDVMKLGK RDGESLGGNF 840 LQRMNNADTE NLVSGLPSLD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-155 | 50 | 391 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678357226 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075605.1 | 0.0 | auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2G9H4W8 | 0.0 | A0A2G9H4W8_9LAMI; Auxin response factor | ||||
STRING | XP_009789648.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |