PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678356827
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 1678aa    MW: 184987 Da    PI: 6.5516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678356827genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08908949346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE+e ++d  + +G++ +++Ia+ +  ++t  +c+++++k
        678356827 908 PWTFEEQEVFIDKLAAFGKD-FRKIASFLD-HKTIADCIDFYYK 949
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding292.5e-0911171157345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                        WT eE   +++av ++G++ +  I+r m  +R++ qc+ ++ 
        678356827 1117 DWTDEEKSMFIQAVSLYGKD-FLMISRFMR-TRSRDQCRIFFS 1157
                       6*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-13892953IPR009057Homeodomain-like
PROSITE profilePS5129313.903904955IPR017884SANT domain
SMARTSM007179.4E-9905953IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-4908949IPR009057Homeodomain-like
PfamPF002495.4E-6908949IPR001005SANT/Myb domain
SuperFamilySSF466895.54E-1211001164IPR009057Homeodomain-like
PROSITE profilePS5129312.39611131164IPR017884SANT domain
Gene3DG3DSA:1.10.10.606.9E-611131158IPR009057Homeodomain-like
SMARTSM007172.3E-811141162IPR001005SANT/Myb domain
PfamPF002493.7E-711171156IPR001005SANT/Myb domain
CDDcd001675.09E-711181156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1678 aa     Download sequence    Send to blast
MPPEQLPWDR RDFRKHERSA SDPRFVNGGG GFGGRWRDHH HPHAPPPPSH PPPYHHHQNP  60
QQPQRWYSDF RSSRPIPNGE FLFSVNTAGR DFLWFYVAVF SLDLPPFLLT LWNGACLWNV  120
SRAELLGLEC PWCGKSVILL TFLRKGHSKQ GGWHVHSDEA GHGFPPFGSR HNDRNFEDDG  180
LRPLGFRGDG RYIRNSRESR GGFGHKEWRS PNWEITAGSS GPGKHTVEIG NHQPQENASC  240
HKPAIPVTVL PSDQHKSDLK EKNEDRGVSE WHAGSSQNIA SSSSLEKPLV ELTSPKPVEN  300
VSLPYNGKLD DLACAVTVSP LDQHPTVLNE KNEDVMGADA VTRSVQSFEK ENTLGSIDRR  360
FLKWSRSGSL SSRCSFVNSS SSKGDEVRHT ETGSDLCSQS MMPLDSPSTG VCVASIVTSP  420
TDNTNSRKKP RLGWGEGLAK YERKKVEGPD NIPEKSEPFS IPDTEIGHSP PGNLLEKTPI  480
LASLPVSPTT PTSVTCRLSP GMDEHQSRKA VGADQISASI KSSEPECKEP SFKLESIDEL  540
SNLSSLVNEL LQSNDQGFVE TEYVKSTSLN KLLLWKVNAL KALEVTESEI DSLETQFRTL  600
VGDPRSCCPG PSVSVSSTGD CCIKPCSEMV NSWSFNTEPT LLKEAVPKDM NVGDAAAQQE  660
DDSVLRNDGR TDVTLSNSLE LVDSSPSELS SKTFKHTEYQ STDPASSCNF GQAYVWNMDH  720
LYDSIISSNK DAAGKVSDDL NKILPSQWHN FDPSSSSHTS SFMWNPSGIK EKILKRRWAT  780
RFNEKVLILK YKVFQHFWKE GRVISVKKIR GKFHKKFGLS QNTCSSNRSS SHSRLLYSAG  840
SLITVPAEEI VDLVNNLLSN FPFKPCRSTL KMPSLILDSQ TKKSQFVSNN GLVDDPAAVE  900
NERSIINPWT FEEQEVFIDK LAAFGKDFRK IASFLDHKTI ADCIDFYYKN HKSECFSRAK  960
RKSDCAKKKS HSSTYLVGAG KRLYRDSNAV SLSILGEAAN ASSYIEMQPK YKSRTPLGSS  1020
RYQNSPRGEE STSQLPDNVD FYSNETAAVD VLAGICGSLS SEAMSSCITS SIDPVDGNQD  1080
RKIQRQNLCI KRPLTPDVTQ CVDECSEESC EEIDSTDWTD EEKSMFIQAV SLYGKDFLMI  1140
SRFMRTRSRD QCRIFFSKAR KCLGLDLIQP PAPYVSSDNI GVGGGDTEGA SVMGTSSSFC  1200
NIVSGEPFDG KPVKENKVSN GHEPSAEVQT MFVSSEVGSR PVYKQDNAFF ATSNKITLKD  1260
SNLNHSMDKN GSCTSAEEFK DNDTEKTGIM SFNVPIFSFT SDRMMTERHL PYTDPCPVDA  1320
DSCMLNKRDG TADEIVNVCD GITSCMLSLQ KDDASESMVS TSMLFPVPIK YQRNSFSGGD  1380
RQNVCSSGVD AVHSQRVLQT TECLSCHSFS SQSNPSESTH IPKGYPVSVT TCEGITWDGD  1440
NKTRITRDCG SKQIKEVPSD QHEVSSQQEC DHASHQNDTV PQWIHSPGQN GTHSRCQSSV  1500
SVEDKSPRNG DVKLFGKVLV ALESKSSPVE SDDHGKCHKQ ESLKLNSETG TGFPHMPDSR  1560
STAELHQIST QTAVQSNEYL PNGASVFSGK ALSRCHGSPG ASVLQAQDVL WTGNRAHFNS  1620
RDASTGSRVV VGGQCSSVSD PISVIKKHHY SKGQSVSVQG GNIVGDEDAW RMNGDVAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-15867956493NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-15867956493NUCLEAR RECEPTOR COREPRESSOR 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427443KKPRLGWGEGLAKYERK
2966970KKKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678356827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.14e-92MYB family protein