PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355990
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 338aa    MW: 36638.8 Da    PI: 5.8696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355990genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-1558102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++v+a k++G g W+ I +++g ++t+ q++s+ qk+
        678355990  58 REKWTANEHQRFVEALKLYGRG-WRQIEEYVG-TKTAIQIRSHAQKF 102
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-1553107IPR009057Homeodomain-like
PROSITE profilePS5129417.6253107IPR017930Myb domain
TIGRFAMsTIGR015578.6E-1656105IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.0E-75798IPR009057Homeodomain-like
SMARTSM007179.5E-1057105IPR001005SANT/Myb domain
PfamPF002491.6E-1258101IPR001005SANT/Myb domain
CDDcd001672.25E-860103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRLDSPTLLD DGGCLPQDPA VDPSTETSNV ASQAQPFSAG GNGYSHKVRK PYVITKQREK  60
WTANEHQRFV EALKLYGRGW RQIEEYVGTK TAIQIRSHAQ KFFAKVSRDT GACGEGLLNL  120
EDIPPPRPKK KPLHPYPRKT ENKEDTDSNA LECLTDDGEK YSPTSVASAV NSDNIESAVA  180
EMHSSCPSPT SCATDALSGN LLTSANFSAV PPGDNLIKKS HQDSESTMES PFCAGQRTSF  240
KLFGKTVVVV NGAGQSSDVM GSSESRPESP DDQLVHGFIP PLPTASPPYP PQANNNDLKR  300
DQSAWCYTCL LHPYLPGTAA ADFNTMLTNT PIQIRDGV
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548212.14e-72protein REVEILLE 7-like isoform X1
RefseqXP_020548213.14e-72protein REVEILLE 7-like isoform X1
RefseqXP_020548214.14e-72protein REVEILLE 7-like isoform X1
TrEMBLA0A4D8ZQC52e-59A0A4D8ZQC5_SALSN; Circadian clock associated 1
STRINGXP_009618565.13e-51(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-40MYB_related family protein