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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678355062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26061.4 Da PI: 5.7115 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.7 | 6.2e-23 | 27 | 75 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+snrqvtfskRr g++KKA+EL++L +ae+a+i+ s+ ++y + 678355062 27 KKIDNTSNRQVTFSKRRSGLFKKASELCILSGAEIAIIVHSTGKRVYSF 75 68******************************************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.693 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-30 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-26 | 20 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.19E-34 | 20 | 94 | No hit | No description |
PRINTS | PR00404 | 5.6E-20 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-22 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-20 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-20 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGSKALTMMQ GTAGKKMTQG RKKIEIKKID NTSNRQVTFS KRRSGLFKKA SELCILSGAE 60 IAIIVHSTGK RVYSFGHPTP DAIVDRFLNG GDAWETNAAP AAKARDYNRH YSEVCEELEM 120 EKKRKQAIEE EKRAEAHGIG GSGGNFWWND VVVDGLELDE LEQYAAAMEE LVKNVSLRAD 180 DLMLAQSSSK SFPALAPPEL HDFGPVVPVD QTAELPWNCF YDPSFGSTGG SELLFTG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678355062 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835329.1 | 2e-79 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G9HQQ6 | 2e-80 | A0A2G9HQQ6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01120.1.p | 7e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-39 | AGAMOUS-like 62 |