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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678355027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 16789.8 Da PI: 8.4775 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.9e-08 | 39 | 80 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WTt E + + da + + + +W+ +ar +g Rt++++k ++ 678355027 39 WTTAENKEFEDALAVYDEDtphRWANVARAVG--RTEEEVKRHY 80 *******************************8..*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-6 | 35 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.6E-11 | 38 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.272 | 39 | 84 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.67E-6 | 39 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGRGVHSIKT RRSFTYSVSS IKAPPGPMAS FSMAHCRGWT TAENKEFEDA LAVYDEDTPH 60 RWANVARAVG RTEEEVKRHY EILVEDITHI ESGGVPFPQY LNLPEPPLSN STQLTTSMLF 120 TQTHVASETS ARKWAPANYR RSAPPAGKSS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-29 | 33 | 100 | 1 | 73 | RADIALIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678355027 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-28 | RAD-like 6 |