PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354823
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 128aa    MW: 14348.2 Da    PI: 8.2247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354823genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000272951123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F ++  L  H+++H
  678354823 29 YSCNFCKREFLSPKALGGHMNVH 51
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
SuperFamilySSF576673.28E-62755No hitNo description
PROSITE profilePS5015710.6582956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPRPWENDVF QGGDGAIALG GYTWPPSSYS CNFCKREFLS PKALGGHMNV HRRDRAKLKL  60
TPESCSPWLM FSPPSVNPKH LKNEETSSGA RCGVETEEYE EIGGCKKRKS HDQMVDLELR  120
LGRSTHLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354823
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931398.16e-24probable transcriptional regulator RABBIT EARS
STRINGSolyc09g011120.1.14e-20(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-19C2H2 family protein